Variant report

Variant	rs10866616
Chromosome Location	chr5:167342127-167342128
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11744503	0.93[AMR][1000 genomes]
rs7732654	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167326800-167342400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:167328000-167343000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:167333600-167345800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:167333800-167343200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr5:167333800-167343200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr5:167337600-167343400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr5:167339600-167343600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:167339800-167343800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:167340200-167343000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:167340200-167343000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr5:167340200-167343000	Weak transcription	HMEC	breast
12	chr5:167340200-167343000	Weak transcription	NHEK	skin
13	chr5:167340200-167343200	Weak transcription	HSMM	muscle
14	chr5:167340600-167343000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr5:167340800-167342400	Weak transcription	Fetal Brain Male	brain
16	chr5:167341600-167342800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr5:167342000-167342200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr5:167342000-167343000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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