Variant report

Variant	rs7732654
Chromosome Location	chr5:167339216-167339217
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10866616	0.82[AFR][1000 genomes]
rs11134478	0.84[LWK][hapmap]
rs11746548	0.96[EUR][1000 genomes]
rs12109455	0.86[GIH][hapmap];0.87[MEX][hapmap]
rs12189098	0.89[LWK][hapmap]
rs1421982	0.80[LWK][hapmap]
rs17069346	0.86[CHB][hapmap];0.92[AFR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs32400	0.81[JPT][hapmap];0.86[AMR][1000 genomes]
rs32402	0.89[CEU][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs32403	0.95[CEU][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35874051	0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7708105	0.83[MEX][hapmap];0.81[TSI][hapmap]
rs7732836	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7732654	RARS	cis	cerebellum	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167326800-167342400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:167328000-167339400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:167328000-167342000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:167328000-167343000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:167333600-167345800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:167333800-167339600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr5:167333800-167343200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr5:167333800-167343200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr5:167335800-167339600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr5:167337600-167339400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:167337600-167343400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr5:167338600-167340400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr5:167339200-167339600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:167339200-167339600	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr5:167339200-167340200	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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