Variant report

Variant	rs11746548
Chromosome Location	chr5:167329808-167329809
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17069346	0.83[EUR][1000 genomes]
rs32403	0.81[EUR][1000 genomes]
rs7727661	0.80[EUR][1000 genomes]
rs7732654	0.96[EUR][1000 genomes]
rs7732836	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167326400-167333400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:167326800-167333400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr5:167326800-167333400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:167326800-167342400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:167327800-167331600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr5:167327800-167333000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr5:167328000-167332400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:167328000-167339200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr5:167328000-167339400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr5:167328000-167342000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr5:167328000-167343000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr5:167328400-167330000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr5:167328400-167331400	Strong transcription	NHEK	skin
14	chr5:167328800-167330800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr5:167329000-167330000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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