Variant report

Variant	rs32403
Chromosome Location	chr5:167345272-167345273
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11746548	0.81[EUR][1000 genomes]
rs12109455	0.82[GIH][hapmap];0.87[MEX][hapmap]
rs17069346	0.83[ASN][1000 genomes]
rs32400	0.91[CHB][hapmap];0.86[JPT][hapmap];0.99[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs32401	0.84[EUR][1000 genomes]
rs32402	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35874051	0.82[AMR][1000 genomes]
rs7708105	0.83[MEX][hapmap]
rs7732654	0.95[CEU][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7732836	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs32403	ODZ2	cis	cerebellum	SCAN
rs32403	RARS	cis	cerebellum	SCAN

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167333600-167345800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:167342400-167347200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:167343000-167346400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:167343000-167347800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:167343200-167345600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr5:167343600-167345600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr5:167343600-167347400	Weak transcription	NHEK	skin
8	chr5:167344000-167345400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:167344000-167345600	Weak transcription	HSMM	muscle
10	chr5:167344200-167345400	Weak transcription	Fetal Kidney	kidney
11	chr5:167344200-167345400	Weak transcription	NH-A	brain
12	chr5:167344200-167345600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr5:167344200-167346200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr5:167344200-167347000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr5:167344200-167347200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr5:167344200-167349000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr5:167344200-167360600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr5:167344400-167345400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr5:167344400-167345400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr5:167344400-167345400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr5:167344400-167345400	Weak transcription	Ovary	ovary
22	chr5:167344400-167345800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr5:167344400-167345800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr5:167344400-167346600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr5:167344400-167347400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr5:167345000-167346400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr5:167345200-167345800	Enhancers	Fetal Brain Female	brain
28	chr5:167345200-167346000	Enhancers	Fetal Heart	heart
29	chr5:167345200-167346400	Enhancers	Left Ventricle	heart
30	chr5:167345200-167346600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr5:167345200-167347000	Enhancers	Fetal Lung	lung
32	chr5:167345200-167347600	Enhancers	Fetal Brain Male	brain

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