Variant report

Variant	rs12109455
Chromosome Location	chr5:167340025-167340026
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11134481	0.81[LWK][hapmap];1.00[YRI][hapmap]
rs12515610	0.87[CEU][hapmap];0.88[MKK][hapmap]
rs17069346	0.95[JPT][hapmap]
rs32403	0.82[GIH][hapmap];0.87[MEX][hapmap]
rs34136062	0.97[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7732654	0.86[GIH][hapmap];0.87[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12109455	RARS	cis	cerebellum	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167326800-167342400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:167328000-167342000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:167328000-167343000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:167333600-167345800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:167333800-167343200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr5:167333800-167343200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr5:167337600-167343400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr5:167338600-167340400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:167339200-167340200	Enhancers	NHEK	skin
10	chr5:167339400-167340200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr5:167339400-167340200	Enhancers	HMEC	breast
12	chr5:167339600-167340200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr5:167339600-167340200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr5:167339600-167343600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr5:167339800-167340400	Enhancers	Fetal Brain Female	brain
16	chr5:167339800-167343800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:167340000-167340600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr5:167340000-167340800	Enhancers	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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