Variant report

Variant	rs34136062
Chromosome Location	chr5:167345630-167345631
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11134481	0.82[AFR][1000 genomes]
rs12109455	0.97[AFR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167333600-167345800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:167342400-167347200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:167343000-167346400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:167343000-167347800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:167343600-167347400	Weak transcription	NHEK	skin
6	chr5:167344200-167346200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr5:167344200-167347000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:167344200-167347200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr5:167344200-167349000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:167344200-167360600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:167344400-167345800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr5:167344400-167345800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr5:167344400-167346600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr5:167344400-167347400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr5:167345000-167346400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:167345200-167345800	Enhancers	Fetal Brain Female	brain
17	chr5:167345200-167346000	Enhancers	Fetal Heart	heart
18	chr5:167345200-167346400	Enhancers	Left Ventricle	heart
19	chr5:167345200-167346600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr5:167345200-167347000	Enhancers	Fetal Lung	lung
21	chr5:167345200-167347600	Enhancers	Fetal Brain Male	brain
22	chr5:167345400-167345800	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr5:167345400-167345800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr5:167345400-167345800	Enhancers	NH-A	brain
25	chr5:167345400-167346000	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr5:167345400-167346000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr5:167345400-167346000	Enhancers	Ovary	ovary
28	chr5:167345400-167346200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr5:167345400-167346600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr5:167345400-167346800	Enhancers	Fetal Kidney	kidney
31	chr5:167345600-167345800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr5:167345600-167346000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr5:167345600-167346400	Enhancers	HSMM	muscle
34	chr5:167345600-167346400	Enhancers	Osteobl	bone
35	chr5:167345600-167346800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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