Variant report

Variant	rs11134481
Chromosome Location	chr5:167360804-167360805
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10475524	0.83[GIH][hapmap];0.83[TSI][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10475862	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12109455	0.81[LWK][hapmap];1.00[YRI][hapmap]
rs28660399	0.80[AFR][1000 genomes]
rs34136062	0.82[AFR][1000 genomes]
rs56738437	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62384403	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62384408	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62384409	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6882229	0.83[GIH][hapmap];0.83[TSI][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6886222	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9942389	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11134481	LOC93622	trans	lymphoblastoid	RTeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167352000-167364400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:167355200-167361800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:167358000-167361200	Weak transcription	Right Atrium	heart
4	chr5:167359200-167361200	Weak transcription	Fetal Heart	heart
5	chr5:167359800-167361600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:167360200-167361000	Enhancers	Fetal Brain Female	brain
7	chr5:167360600-167361200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:167360600-167361200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:167360600-167361600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr5:167360600-167361600	Enhancers	NHEK	skin
11	chr5:167360800-167361000	Enhancers	Fetal Brain Male	brain
12	chr5:167360800-167361200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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