Variant report

Variant	rs10867423
Chromosome Location	chr9:71991799-71991800
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:71991329..71993145-chr9:71996881..71999330,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10116389	0.82[CEU][hapmap]
rs10746594	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10780334	0.83[EUR][1000 genomes]
rs10780360	0.92[JPT][hapmap]
rs10780361	0.93[JPT][hapmap]
rs12379338	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1334312	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1929896	0.88[CEU][hapmap]
rs2309431	0.82[CEU][hapmap]
rs2777866	0.84[CEU][hapmap]
rs2777878	0.84[CEU][hapmap]
rs2781521	0.82[CEU][hapmap]
rs2781522	0.84[CEU][hapmap]
rs3858105	0.89[CEU][hapmap]
rs3934600	0.82[CEU][hapmap]
rs4237233	0.82[CEU][hapmap]
rs4237234	0.84[CEU][hapmap]
rs4483220	0.84[CEU][hapmap]
rs4484762	0.84[CEU][hapmap]
rs4503164	0.83[EUR][1000 genomes]
rs4744886	0.94[CEU][hapmap]
rs4744894	0.82[CEU][hapmap]
rs6559488	0.82[CEU][hapmap]
rs6559489	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs6559490	0.84[EUR][1000 genomes]
rs6559498	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6559512	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs6559513	0.82[CEU][hapmap]
rs6559527	0.89[CEU][hapmap]
rs7019551	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7043451	0.81[CEU][hapmap]
rs7044071	0.82[JPT][hapmap]
rs7046199	0.89[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7856778	0.84[CEU][hapmap]
rs7866250	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817406	chr9:71675454-72179318	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv831610	chr9:71846941-72016835	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv893428	chr9:71926658-72027641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv893429	chr9:71961923-72047337	ZNF genes & repeats Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv893430	chr9:71968730-72036369	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1047593	chr9:71971536-72180583	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71962200-71994200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:71963200-71991800	Weak transcription	Pancreas	Pancrea
3	chr9:71972600-71991800	Weak transcription	Right Atrium	heart
4	chr9:71977400-71992400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:71979000-72001800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:71983400-72001800	Weak transcription	Brain Anterior Caudate	brain
7	chr9:71985400-71994200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr9:71985400-72006600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr9:71985600-71992400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr9:71986600-71991800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr9:71986600-71991800	Weak transcription	Gastric	stomach
12	chr9:71986600-71992200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr9:71986600-72002600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr9:71986800-71994200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr9:71987000-71992200	Weak transcription	Brain Angular Gyrus	brain
16	chr9:71987600-71991800	Weak transcription	Psoas Muscle	Psoas
17	chr9:71988800-71998600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr9:71989000-72002800	Weak transcription	Brain Substantia Nigra	brain
19	chr9:71989200-71992200	Enhancers	Ovary	ovary
20	chr9:71989600-71991800	Weak transcription	Right Ventricle	heart
21	chr9:71989600-71997000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr9:71989800-71994000	Genic enhancers	Fetal Heart	heart
23	chr9:71990000-71991800	Weak transcription	Fetal Stomach	stomach
24	chr9:71990000-71992200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr9:71990000-71992200	Enhancers	HMEC	breast
26	chr9:71990200-71992400	Enhancers	NHEK	skin
27	chr9:71990600-71992400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr9:71990600-71992600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr9:71990600-72000200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr9:71990800-71992000	Enhancers	HSMMtube	muscle
31	chr9:71991000-71992000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr9:71991000-71992000	Enhancers	HUVEC	blood vessel
33	chr9:71991000-71992600	Enhancers	Duodenum Smooth Muscle	Duodenum
34	chr9:71991000-71992600	Enhancers	NHDF-Ad	bronchial
35	chr9:71991000-71992800	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr9:71991000-71992800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr9:71991200-71991800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
38	chr9:71991200-71991800	Enhancers	Stomach Mucosa	stomach
39	chr9:71991200-71992000	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr9:71991200-71992000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr9:71991200-71992000	Flanking Active TSS	Osteobl	bone
42	chr9:71991200-71992200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr9:71991200-71992200	Enhancers	Adipose Nuclei	Adipose
44	chr9:71991200-71992600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr9:71991200-71994200	Enhancers	HSMM	muscle
46	chr9:71991400-71991800	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr9:71991400-71992000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
48	chr9:71991400-71992000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr9:71991400-71992000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr9:71991400-71992000	Enhancers	Hela-S3	cervix

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