Variant report

Variant	rs7019551
Chromosome Location	chr9:71977978-71977979
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10116389	0.84[CHB][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs10746594	0.93[CEU][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10780334	0.88[ASN][1000 genomes]
rs10780344	0.85[JPT][hapmap]
rs10780361	0.83[CHB][hapmap]
rs10867414	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10867423	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11138419	0.88[YRI][hapmap]
rs12379338	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1334312	0.88[CEU][hapmap];0.84[CHB][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs1929896	0.87[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap]
rs2244720	0.88[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs2309431	0.88[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs2777866	0.82[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap]
rs2777878	0.82[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap]
rs2781521	0.88[CHB][hapmap];0.92[JPT][hapmap]
rs2781522	0.82[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap]
rs3858105	0.88[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3934600	0.84[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs4237230	0.80[JPT][hapmap]
rs4237232	0.83[ASN][1000 genomes]
rs4237233	0.84[CHB][hapmap];0.86[ASN][1000 genomes]
rs4237234	0.82[CEU][hapmap];0.84[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs4483220	0.82[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap]
rs4484762	0.82[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap]
rs4503164	0.88[ASN][1000 genomes]
rs4744886	0.94[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744894	0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs6559488	0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6559489	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6559490	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6559498	0.86[CEU][hapmap]
rs6559512	0.86[CEU][hapmap];0.88[ASN][1000 genomes]
rs6559513	0.84[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6559527	0.88[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap]
rs7043451	0.80[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7044071	0.83[JPT][hapmap]
rs7046199	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7856778	0.82[CEU][hapmap];0.87[CHB][hapmap];0.92[JPT][hapmap]
rs7866250	0.93[CEU][hapmap]
rs9314682	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049175	chr9:71418242-71986910	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv817406	chr9:71675454-72179318	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv831610	chr9:71846941-72016835	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv893428	chr9:71926658-72027641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv893429	chr9:71961923-72047337	ZNF genes & repeats Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv893430	chr9:71968730-72036369	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1047593	chr9:71971536-72180583	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71955400-71981800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:71962200-71994200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:71962400-71978000	Weak transcription	Gastric	stomach
4	chr9:71963200-71991800	Weak transcription	Pancreas	Pancrea
5	chr9:71971800-71978000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr9:71972600-71978400	Weak transcription	Right Ventricle	heart
7	chr9:71972600-71980800	Weak transcription	Aorta	Aorta
8	chr9:71972600-71991800	Weak transcription	Right Atrium	heart
9	chr9:71972800-71991400	Weak transcription	Fetal Muscle Leg	muscle
10	chr9:71973000-71986200	Weak transcription	Stomach Mucosa	stomach
11	chr9:71973200-71979600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr9:71974000-71978000	Weak transcription	Left Ventricle	heart
13	chr9:71974400-71978000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr9:71974800-71981600	Enhancers	Fetal Heart	heart
15	chr9:71974800-71982000	Weak transcription	Ovary	ovary
16	chr9:71976600-71981000	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr9:71976600-71981200	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr9:71977000-71980600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr9:71977400-71992400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr9:71977600-71978800	Enhancers	Psoas Muscle	Psoas

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