Variant report

Variant	rs10867930
Chromosome Location	chr9:85659677-85659678
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85657659..85660023-chr9:85660042..85662289,2	MCF-7	breast:
2	chr9:85658412..85663531-chr9:85675948..85679642,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165105	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1008171	0.92[CEU][hapmap];0.83[AMR][1000 genomes]
rs10116216	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs10121376	0.85[AMR][1000 genomes]
rs10735559	0.89[CEU][hapmap]
rs10780561	0.92[CEU][hapmap]
rs10780562	0.81[CEU][hapmap]
rs10780563	0.85[JPT][hapmap]
rs10780564	0.86[AMR][1000 genomes]
rs10867928	0.81[JPT][hapmap]
rs1125915	0.89[CEU][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1393563	0.89[CEU][hapmap];0.81[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1502683	0.89[CEU][hapmap]
rs1502684	0.89[CEU][hapmap]
rs1546315	0.85[JPT][hapmap];0.81[AMR][1000 genomes]
rs1580881	0.80[AMR][1000 genomes]
rs1995423	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2062761	0.89[CEU][hapmap];0.90[JPT][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4146961	0.81[JPT][hapmap]
rs4301515	0.80[JPT][hapmap]
rs4355855	0.89[CEU][hapmap]
rs4391505	0.89[CEU][hapmap]
rs4460464	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs4877725	0.89[CEU][hapmap]
rs4877726	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6559694	0.85[JPT][hapmap]
rs6559695	0.85[CEU][hapmap]
rs7847666	0.85[JPT][hapmap]
rs7854101	0.85[JPT][hapmap]
rs871512	0.92[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893511	chr9:85495968-85833127	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85644800-85670600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr9:85645600-85662800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr9:85655200-85671400	Weak transcription	Fetal Intestine Small	intestine
4	chr9:85656800-85662800	Weak transcription	Pancreas	Pancrea
5	chr9:85657000-85662400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr9:85657200-85660400	Weak transcription	Stomach Mucosa	stomach
7	chr9:85657200-85662400	Weak transcription	Hela-S3	cervix
8	chr9:85657400-85662600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr9:85658200-85661400	Weak transcription	A549	lung
10	chr9:85659400-85660400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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