Variant report

Variant	rs1125915
Chromosome Location	chr9:85650916-85650917
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85648525..85651989-chr9:85652042..85656919,4	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1008171	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs1010480	0.82[CEU][hapmap]
rs10116254	0.82[CEU][hapmap]
rs10121204	0.81[CEU][hapmap]
rs10121376	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10121395	0.82[CEU][hapmap]
rs10735559	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs10780561	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs10780562	0.84[CEU][hapmap]
rs10780563	0.81[CEU][hapmap]
rs10780564	0.84[EUR][1000 genomes]
rs10780565	0.82[CEU][hapmap]
rs10780567	0.81[CEU][hapmap]
rs10867928	0.82[CEU][hapmap]
rs10867929	0.81[CEU][hapmap]
rs10867930	0.89[CEU][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1393562	0.82[CEU][hapmap]
rs1393563	0.93[CEU][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1393565	0.81[CEU][hapmap]
rs1502682	0.81[CEU][hapmap]
rs1502683	0.92[CEU][hapmap]
rs1502684	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs1502685	0.82[CEU][hapmap]
rs1546315	0.81[CEU][hapmap]
rs1546316	0.82[CEU][hapmap]
rs1546317	0.82[CEU][hapmap]
rs1580881	0.82[CEU][hapmap]
rs1976455	0.81[CEU][hapmap]
rs1995423	0.81[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2062761	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2279814	0.81[CEU][hapmap]
rs4146960	0.80[CEU][hapmap]
rs4146961	0.82[CEU][hapmap]
rs4301515	0.82[CEU][hapmap]
rs4355855	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs4385545	0.81[CEU][hapmap]
rs4391505	0.92[CEU][hapmap]
rs4623517	0.81[CEU][hapmap]
rs4877244	0.82[CEU][hapmap]
rs4877725	0.93[CEU][hapmap]
rs4877726	0.82[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6559693	0.80[EUR][1000 genomes]
rs6559694	0.81[CEU][hapmap]
rs6559695	0.88[CEU][hapmap]
rs7019227	0.81[CEU][hapmap]
rs7024864	0.82[CEU][hapmap]
rs7847666	0.81[CEU][hapmap]
rs7854101	0.81[CEU][hapmap]
rs7864688	0.80[EUR][1000 genomes]
rs7866666	0.81[CEU][hapmap]
rs871512	0.81[CEU][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs952450	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893511	chr9:85495968-85833127	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85640400-85656400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr9:85644200-85654800	Weak transcription	Fetal Intestine Small	intestine
3	chr9:85644800-85670600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr9:85645600-85662800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr9:85647400-85654200	Weak transcription	Gastric	stomach
6	chr9:85647400-85656400	Weak transcription	Stomach Mucosa	stomach
7	chr9:85649600-85652000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr9:85649800-85651200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr9:85649800-85654200	Weak transcription	Pancreas	Pancrea
10	chr9:85650200-85654200	Weak transcription	A549	lung
11	chr9:85650200-85656600	Weak transcription	HMEC	breast

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