Variant report

Variant	rs7864688
Chromosome Location	chr9:85597245-85597246
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85594172..85597684-chr9:85598731..85602466,4	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FRMD3-5	chr9:85594505-85597351	NONHSAT132729

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1008171	0.96[EUR][1000 genomes]
rs10121376	0.91[EUR][1000 genomes]
rs10735559	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10780561	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10780562	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10780563	0.83[EUR][1000 genomes]
rs10780564	0.95[EUR][1000 genomes]
rs10867928	0.80[EUR][1000 genomes]
rs1125915	0.80[EUR][1000 genomes]
rs1393563	0.87[EUR][1000 genomes]
rs1393565	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1502683	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1502684	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2062761	0.80[EUR][1000 genomes]
rs2279814	0.81[EUR][1000 genomes]
rs4146961	0.81[EUR][1000 genomes]
rs4301515	0.84[EUR][1000 genomes]
rs4355855	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4385545	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4391505	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4623517	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4877724	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4877725	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6559693	0.91[EUR][1000 genomes]
rs6559694	0.83[EUR][1000 genomes]
rs7847666	0.84[EUR][1000 genomes]
rs7849126	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7853052	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7854101	0.83[EUR][1000 genomes]
rs7862012	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7867614	0.83[EUR][1000 genomes]
rs7872982	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050771	chr9:85416931-85643417	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv893511	chr9:85495968-85833127	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv6585	chr9:85566659-85611489	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85591200-85602800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:85592200-85599200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr9:85592400-85602400	Weak transcription	Esophagus	oesophagus
4	chr9:85592600-85601800	Weak transcription	Fetal Intestine Small	intestine
5	chr9:85592800-85608600	Weak transcription	Stomach Mucosa	stomach
6	chr9:85594400-85602800	Weak transcription	Gastric	stomach
7	chr9:85594600-85606000	Weak transcription	Fetal Intestine Large	intestine
8	chr9:85594800-85600800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr9:85594800-85628200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr9:85596200-85597600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr9:85596200-85597600	Enhancers	HMEC	breast
12	chr9:85596200-85597600	Enhancers	NHEK	skin
13	chr9:85596200-85597800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr9:85596200-85602400	Weak transcription	Fetal Stomach	stomach
15	chr9:85596600-85597800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr9:85596600-85598800	Enhancers	Fetal Thymus	thymus
17	chr9:85596600-85599000	Enhancers	Thymus	Thymus
18	chr9:85596600-85601200	Strong transcription	Pancreas	Pancrea
19	chr9:85597000-85597600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr9:85597000-85597600	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr9:85597000-85597600	Enhancers	NHDF-Ad	bronchial
22	chr9:85597200-85597600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr9:85597200-85627000	Weak transcription	A549	lung

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