Variant report

Variant	rs10868802
Chromosome Location	chr9:72941996-72941997
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11142351	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2148858	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2282068	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv831615	chr9:72852705-73019692	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1049132	chr9:72895382-73005897	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72875000-72949800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:72876400-72942600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr9:72876400-72955200	Weak transcription	Stomach Mucosa	stomach
4	chr9:72877000-72942800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:72891400-72948200	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr9:72900600-72942600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr9:72907200-72942600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr9:72908800-72942800	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr9:72912000-72943000	Strong transcription	HSMM	muscle
10	chr9:72912600-72947800	Strong transcription	Placenta	Placenta
11	chr9:72913800-72957800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr9:72918200-72942800	Weak transcription	Aorta	Aorta
13	chr9:72924000-72944400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr9:72924200-72943200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr9:72925600-72944000	Strong transcription	Liver	Liver
16	chr9:72925800-72942000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr9:72926000-72944200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr9:72926200-72942800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr9:72926200-72945000	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr9:72926400-72942000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr9:72926400-72965000	Weak transcription	Fetal Brain Male	brain
22	chr9:72926400-72967000	Weak transcription	Fetal Heart	heart
23	chr9:72928200-72948000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr9:72928600-72942800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr9:72928800-72942000	Strong transcription	Primary B cells from peripheral blood	blood
26	chr9:72928800-72942600	Strong transcription	Duodenum Mucosa	Duodenum
27	chr9:72928800-72942800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr9:72929400-72942600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr9:72931200-72942600	Weak transcription	Brain Angular Gyrus	brain
30	chr9:72932000-72944400	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr9:72932200-72943000	Strong transcription	NH-A	brain
32	chr9:72932200-72944400	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr9:72932800-72942400	Strong transcription	Cortex derived primary cultured neurospheres	brain
34	chr9:72932800-72943000	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr9:72932800-72943800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr9:72933000-72942400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
37	chr9:72933000-72943200	Strong transcription	Fetal Thymus	thymus
38	chr9:72933200-72942600	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr9:72933400-72942000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr9:72933600-72942400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr9:72935800-72943000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr9:72936000-72970800	Weak transcription	Psoas Muscle	Psoas
43	chr9:72936600-72942800	Weak transcription	Fetal Intestine Small	intestine
44	chr9:72936600-72943400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr9:72936800-72942000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr9:72937600-72942600	Strong transcription	Primary B cells from cord blood	blood
47	chr9:72937600-72942600	Weak transcription	Right Ventricle	heart
48	chr9:72937600-72942800	Weak transcription	Fetal Stomach	stomach
49	chr9:72937800-72944400	Strong transcription	Skeletal Muscle Female	skeletal muscle
50	chr9:72938000-72942800	Strong transcription	Primary neutrophils fromperipheralblood	blood

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