Variant report

Variant	rs10868855
Chromosome Location	chr9:73194847-73194848
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFF	chr9:73194747-73195050	HepG2	liver:	n/a	chr9:73194844-73194862
2	MAFK	chr9:73194715-73195030	HepG2	liver:	n/a	chr9:73194972-73194983 chr9:73194905-73194922 chr9:73194971-73194985
3	MAFK	chr9:73194679-73195016	IMR90	lung:	n/a	chr9:73194972-73194983 chr9:73194905-73194922 chr9:73194971-73194985
4	MAFK	chr9:73194665-73195044	HepG2	liver:	n/a	chr9:73194972-73194983 chr9:73194905-73194922 chr9:73194971-73194985

Variant related genes	Relation type
ENSG00000272232	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10780950	0.97[ASN][1000 genomes]
rs1317102	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1317103	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831616	chr9:73077855-73220928	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv614598	chr9:73193371-73218656	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73157800-73199800	Weak transcription	Aorta	Aorta
2	chr9:73188400-73195600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr9:73189600-73213400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:73190400-73195600	Weak transcription	Brain Substantia Nigra	brain
5	chr9:73191400-73195400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:73191800-73198400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:73192400-73199800	Weak transcription	Left Ventricle	heart
8	chr9:73192600-73195200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:73192600-73201200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:73192600-73202200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr9:73192800-73195400	Weak transcription	HMEC	breast
12	chr9:73192800-73201000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr9:73193000-73195200	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr9:73193000-73196000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr9:73193000-73196000	Weak transcription	HUVEC	blood vessel
16	chr9:73193000-73196400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr9:73193000-73196400	Weak transcription	NHDF-Ad	bronchial
18	chr9:73193000-73201200	Weak transcription	Stomach Smooth Muscle	stomach
19	chr9:73193000-73201200	Weak transcription	NHLF	lung
20	chr9:73193200-73195200	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr9:73193200-73198600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr9:73193200-73200200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr9:73193400-73196200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr9:73193800-73201200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr9:73194000-73196400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr9:73194000-73200200	Weak transcription	Right Ventricle	heart
27	chr9:73194200-73195000	Enhancers	Right Atrium	heart
28	chr9:73194600-73195000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr9:73194800-73195400	Enhancers	Placenta Amnion	Placenta Amnion

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