Variant report

Variant	rs1317102
Chromosome Location	chr9:73195698-73195699
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr9:73195523-73195945	HL-60	blood:	n/a	n/a
2	SPI1	chr9:73195425-73196040	HL-60	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000272232	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10780950	0.95[ASN][1000 genomes]
rs10868855	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1317103	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831616	chr9:73077855-73220928	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv614598	chr9:73193371-73218656	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73157800-73199800	Weak transcription	Aorta	Aorta
2	chr9:73189600-73213400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:73191800-73198400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:73192400-73199800	Weak transcription	Left Ventricle	heart
5	chr9:73192600-73201200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:73192600-73202200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr9:73192800-73201000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr9:73193000-73196000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr9:73193000-73196000	Weak transcription	HUVEC	blood vessel
10	chr9:73193000-73196400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:73193000-73196400	Weak transcription	NHDF-Ad	bronchial
12	chr9:73193000-73201200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr9:73193000-73201200	Weak transcription	NHLF	lung
14	chr9:73193200-73198600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr9:73193200-73200200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:73193400-73196200	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr9:73193800-73201200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr9:73194000-73196400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr9:73194000-73200200	Weak transcription	Right Ventricle	heart
20	chr9:73195000-73200200	Weak transcription	Right Atrium	heart
21	chr9:73195200-73196600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr9:73195200-73196600	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr9:73195200-73196800	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr9:73195400-73195800	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr9:73195400-73196400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr9:73195400-73196400	Enhancers	HMEC	breast
27	chr9:73195400-73196800	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr9:73195400-73196800	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr9:73195600-73196400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr9:73195600-73196600	Enhancers	Brain Substantia Nigra	brain
31	chr9:73195600-73196600	Enhancers	Pancreatic Islets	Pancreatic Islet

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