Variant report

Variant	rs10868893
Chromosome Location	chr9:73419560-73419561
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10117842	0.82[ASN][1000 genomes]
rs1034542	0.81[ASN][1000 genomes]
rs1034543	0.82[ASN][1000 genomes]
rs10780971	0.82[ASN][1000 genomes]
rs10780975	0.91[CHD][hapmap]
rs10780978	0.91[CHD][hapmap]
rs10868894	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10868899	0.82[ASN][1000 genomes]
rs10868909	1.00[ASW][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap]
rs10868921	0.86[CHB][hapmap]
rs7864774	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893440	chr9:73225802-73434585	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	76 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10868893	FAM189A2	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73407400-73421000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:73407400-73421000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:73407400-73427000	Weak transcription	Aorta	Aorta
4	chr9:73411200-73437400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr9:73411800-73433400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:73416600-73420800	Weak transcription	Fetal Muscle Leg	muscle
7	chr9:73417600-73420800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:73417600-73420800	Weak transcription	Adipose Nuclei	Adipose
9	chr9:73418200-73419600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr9:73418200-73420800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr9:73418200-73421000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr9:73418200-73444000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr9:73418200-73447400	Weak transcription	Fetal Kidney	kidney
14	chr9:73418400-73420800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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