Variant report

Variant	rs10780971
Chromosome Location	chr9:73443293-73443294
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10117842	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10118602	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1034539	0.88[ASN][1000 genomes]
rs1034542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1034543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10511987	0.85[ASN][1000 genomes]
rs10780972	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10868893	0.82[ASN][1000 genomes]
rs10868894	0.94[ASN][1000 genomes]
rs10868895	0.86[ASN][1000 genomes]
rs10868896	0.88[ASN][1000 genomes]
rs10868897	0.88[ASN][1000 genomes]
rs10868898	0.88[ASN][1000 genomes]
rs10868899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868900	0.88[ASN][1000 genomes]
rs10868901	0.88[ASN][1000 genomes]
rs10868902	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10868903	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10868908	0.88[ASN][1000 genomes]
rs10868909	0.88[ASN][1000 genomes]
rs10868916	0.89[ASN][1000 genomes]
rs10868921	0.85[ASN][1000 genomes]
rs11142603	0.88[ASN][1000 genomes]
rs11142605	0.88[ASN][1000 genomes]
rs11142607	0.88[ASN][1000 genomes]
rs11142609	0.85[ASN][1000 genomes]
rs11142611	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11142612	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11142613	0.88[ASN][1000 genomes]
rs11142620	0.88[ASN][1000 genomes]
rs11142626	0.88[ASN][1000 genomes]
rs11142627	0.88[ASN][1000 genomes]
rs11142629	0.85[ASN][1000 genomes]
rs12378267	0.88[ASN][1000 genomes]
rs12379273	0.88[ASN][1000 genomes]
rs1337029	0.88[ASN][1000 genomes]
rs1337032	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1415228	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1415229	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1415230	0.87[ASN][1000 genomes]
rs1415231	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17470958	0.88[ASN][1000 genomes]
rs1932926	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2011851	0.88[ASN][1000 genomes]
rs2011853	0.88[ASN][1000 genomes]
rs2039640	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2039641	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2039645	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2275242	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs28394660	0.88[ASN][1000 genomes]
rs28607835	0.88[ASN][1000 genomes]
rs4443722	0.88[ASN][1000 genomes]
rs6560156	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6560157	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6560158	0.90[ASN][1000 genomes]
rs718005	0.88[ASN][1000 genomes]
rs7855869	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7861318	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7862839	0.80[AFR][1000 genomes]
rs7863095	0.82[AFR][1000 genomes]
rs7864774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv13599	chr9:73442098-73444722	Enhancers Strong transcription Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv14710	chr9:73443111-73444722	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73418200-73444000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr9:73418200-73447400	Weak transcription	Fetal Kidney	kidney
3	chr9:73427600-73483400	Weak transcription	Aorta	Aorta
4	chr9:73437400-73447200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr9:73438200-73444800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr9:73438600-73444800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr9:73438600-73449000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:73438600-73456800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:73439000-73445000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr9:73440400-73447200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr9:73442200-73459800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr9:73442800-73444200	Weak transcription	Brain Substantia Nigra	brain
13	chr9:73443000-73444000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:73443000-73444600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr9:73443000-73453400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr9:73443200-73444400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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