Variant report

Variant	rs12378267
Chromosome Location	chr9:73449267-73449268
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:73444671..73446779-chr9:73448314..73450749,2	K562	blood:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10117842	0.88[ASN][1000 genomes]
rs10118452	0.89[ASN][1000 genomes]
rs10120927	0.89[ASN][1000 genomes]
rs10121000	0.89[ASN][1000 genomes]
rs1034539	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1034542	0.87[ASN][1000 genomes]
rs1034543	0.88[ASN][1000 genomes]
rs10511987	0.97[ASN][1000 genomes]
rs10780971	0.88[ASN][1000 genomes]
rs10780972	0.85[ASN][1000 genomes]
rs10780975	0.89[ASN][1000 genomes]
rs10780976	0.89[ASN][1000 genomes]
rs10780977	0.89[ASN][1000 genomes]
rs10780978	0.89[ASN][1000 genomes]
rs10780980	0.87[ASN][1000 genomes]
rs10780981	0.87[ASN][1000 genomes]
rs10868894	0.82[ASN][1000 genomes]
rs10868895	0.98[ASN][1000 genomes]
rs10868896	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868897	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10868898	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10868899	0.88[ASN][1000 genomes]
rs10868900	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10868901	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10868908	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868909	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868911	0.89[ASN][1000 genomes]
rs10868914	0.89[ASN][1000 genomes]
rs10868915	0.89[ASN][1000 genomes]
rs10868917	0.89[ASN][1000 genomes]
rs10868918	0.89[ASN][1000 genomes]
rs10868919	0.89[ASN][1000 genomes]
rs10868920	0.89[ASN][1000 genomes]
rs10868921	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11142603	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11142605	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11142607	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142609	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11142613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142618	0.89[ASN][1000 genomes]
rs11142619	0.89[ASN][1000 genomes]
rs11142620	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142625	0.89[ASN][1000 genomes]
rs11142626	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142627	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142629	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12379273	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12380236	0.89[ASN][1000 genomes]
rs1337025	0.87[ASN][1000 genomes]
rs1337026	0.89[ASN][1000 genomes]
rs1337029	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1415222	0.87[ASN][1000 genomes]
rs1415223	0.87[ASN][1000 genomes]
rs1415224	0.88[ASN][1000 genomes]
rs17470958	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2011851	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2011853	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28394660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28607835	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34543029	0.89[ASN][1000 genomes]
rs4112753	0.89[ASN][1000 genomes]
rs4351476	0.89[ASN][1000 genomes]
rs4443722	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs529897	0.96[EUR][1000 genomes]
rs6560163	0.89[ASN][1000 genomes]
rs6560165	0.89[ASN][1000 genomes]
rs6560166	0.89[ASN][1000 genomes]
rs7028011	0.89[ASN][1000 genomes]
rs7028142	0.89[ASN][1000 genomes]
rs7028680	0.89[ASN][1000 genomes]
rs7028973	0.89[ASN][1000 genomes]
rs7031308	0.89[ASN][1000 genomes]
rs7045895	0.89[ASN][1000 genomes]
rs7048214	0.89[ASN][1000 genomes]
rs718005	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7864774	0.88[ASN][1000 genomes]
rs7873530	0.87[ASN][1000 genomes]
rs7873539	0.87[ASN][1000 genomes]
rs7873917	0.87[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73427600-73483400	Weak transcription	Aorta	Aorta
2	chr9:73438600-73456800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:73442200-73459800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr9:73443000-73453400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr9:73448000-73449600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:73448200-73449400	Weak transcription	NHDF-Ad	bronchial
7	chr9:73448200-73449600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:73448200-73454800	Weak transcription	Gastric	stomach
9	chr9:73448200-73473600	Weak transcription	Fetal Kidney	kidney
10	chr9:73448400-73459200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr9:73448400-73469000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr9:73448600-73457000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr9:73449000-73449400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:73449200-73451400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr9:73449200-73455400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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