Variant report

Variant	rs11142625
Chromosome Location	chr9:73471822-73471823
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10118452	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10118602	0.89[ASN][1000 genomes]
rs10120927	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10121000	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1034539	0.89[ASN][1000 genomes]
rs10511987	0.86[ASN][1000 genomes]
rs10780974	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs10780975	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10780976	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10780977	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10780978	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10780980	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10780981	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10868895	0.88[ASN][1000 genomes]
rs10868896	0.89[ASN][1000 genomes]
rs10868897	0.89[ASN][1000 genomes]
rs10868898	0.89[ASN][1000 genomes]
rs10868900	0.89[ASN][1000 genomes]
rs10868901	0.89[ASN][1000 genomes]
rs10868902	0.89[ASN][1000 genomes]
rs10868903	0.89[ASN][1000 genomes]
rs10868908	0.89[ASN][1000 genomes]
rs10868909	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10868911	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868916	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10868917	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868918	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868919	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868920	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868921	0.81[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11142603	0.89[ASN][1000 genomes]
rs11142605	0.89[ASN][1000 genomes]
rs11142607	0.89[ASN][1000 genomes]
rs11142609	0.86[ASN][1000 genomes]
rs11142611	0.89[ASN][1000 genomes]
rs11142612	0.89[ASN][1000 genomes]
rs11142613	0.89[ASN][1000 genomes]
rs11142618	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142619	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142620	0.89[ASN][1000 genomes]
rs11142626	0.89[ASN][1000 genomes]
rs11142627	0.89[ASN][1000 genomes]
rs11142629	0.86[ASN][1000 genomes]
rs12378267	0.89[ASN][1000 genomes]
rs12379273	0.89[ASN][1000 genomes]
rs12380236	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1337025	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1337026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1337029	0.89[ASN][1000 genomes]
rs1337032	0.89[ASN][1000 genomes]
rs1415222	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1415223	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1415224	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1415228	0.86[ASN][1000 genomes]
rs1415229	0.89[ASN][1000 genomes]
rs1415230	0.86[ASN][1000 genomes]
rs1415231	0.88[ASN][1000 genomes]
rs17470958	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1932926	0.89[ASN][1000 genomes]
rs2011851	0.89[ASN][1000 genomes]
rs2011853	0.89[ASN][1000 genomes]
rs2039640	0.89[ASN][1000 genomes]
rs2039641	0.89[ASN][1000 genomes]
rs2039645	0.89[ASN][1000 genomes]
rs2275242	0.89[ASN][1000 genomes]
rs28394660	0.89[ASN][1000 genomes]
rs28607835	0.89[ASN][1000 genomes]
rs34543029	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4112753	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4351476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4412420	0.93[EUR][1000 genomes]
rs4443722	0.89[ASN][1000 genomes]
rs505107	0.93[EUR][1000 genomes]
rs506067	0.92[EUR][1000 genomes]
rs532855	0.93[EUR][1000 genomes]
rs564929	0.93[EUR][1000 genomes]
rs6560156	0.89[ASN][1000 genomes]
rs6560157	0.89[ASN][1000 genomes]
rs6560158	0.89[ASN][1000 genomes]
rs6560163	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6560165	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6560166	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7028011	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7028142	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7028680	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7028973	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7031308	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7045895	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7048214	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs718005	0.89[ASN][1000 genomes]
rs7855869	0.89[ASN][1000 genomes]
rs7861318	0.89[ASN][1000 genomes]
rs7873530	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7873539	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7873917	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73427600-73483400	Weak transcription	Aorta	Aorta
2	chr9:73448200-73473600	Weak transcription	Fetal Kidney	kidney
3	chr9:73450600-73477600	Weak transcription	Ovary	ovary
4	chr9:73455600-73480600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:73457200-73485200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:73457800-73480600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr9:73461400-73482000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr9:73463600-73472800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr9:73466200-73483000	Weak transcription	Fetal Heart	heart
10	chr9:73470200-73473200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr9:73470200-73475000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr9:73471000-73473200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links