Variant report

Variant	rs2039640
Chromosome Location	chr9:73448889-73448890
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:73444671..73446779-chr9:73448314..73450749,2	K562	blood:

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10117842	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10118452	0.89[ASN][1000 genomes]
rs10118602	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10119412	0.86[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs10120927	0.89[ASN][1000 genomes]
rs10121000	0.89[ASN][1000 genomes]
rs10121631	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs10122559	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs10124944	0.86[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1034542	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1034543	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10746856	0.86[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs10780971	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10780972	0.87[ASN][1000 genomes]
rs10780975	0.89[ASN][1000 genomes]
rs10780976	0.89[ASN][1000 genomes]
rs10780977	0.89[ASN][1000 genomes]
rs10780978	0.89[ASN][1000 genomes]
rs10780980	0.86[ASN][1000 genomes]
rs10780981	0.86[ASN][1000 genomes]
rs10868894	0.85[ASN][1000 genomes]
rs10868899	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10868902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868903	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868904	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs10868905	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs10868906	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs10868907	0.86[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs10868910	0.86[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs10868911	0.89[ASN][1000 genomes]
rs10868914	0.89[ASN][1000 genomes]
rs10868915	0.89[ASN][1000 genomes]
rs10868916	0.99[ASN][1000 genomes]
rs10868917	0.89[ASN][1000 genomes]
rs10868918	0.89[ASN][1000 genomes]
rs10868919	0.89[ASN][1000 genomes]
rs10868920	0.89[ASN][1000 genomes]
rs11142611	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142612	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142614	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs11142618	0.89[ASN][1000 genomes]
rs11142619	0.89[ASN][1000 genomes]
rs11142625	0.89[ASN][1000 genomes]
rs12380236	0.89[ASN][1000 genomes]
rs1337025	0.86[ASN][1000 genomes]
rs1337026	0.89[ASN][1000 genomes]
rs1337027	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1337028	0.86[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1337030	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1337031	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1337032	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1415222	0.86[ASN][1000 genomes]
rs1415223	0.86[ASN][1000 genomes]
rs1415224	0.87[ASN][1000 genomes]
rs1415228	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1415229	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1415230	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1415231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1932926	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2039641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2039645	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2275242	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34543029	0.89[ASN][1000 genomes]
rs35672482	0.85[AFR][1000 genomes]
rs4112753	0.89[ASN][1000 genomes]
rs4351476	0.89[ASN][1000 genomes]
rs6560156	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6560157	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6560158	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6560159	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs6560160	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs6560161	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs6560162	0.86[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs6560163	0.89[ASN][1000 genomes]
rs6560165	0.89[ASN][1000 genomes]
rs6560166	0.89[ASN][1000 genomes]
rs7022926	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs7027846	0.93[EUR][1000 genomes]
rs7028011	0.89[ASN][1000 genomes]
rs7028142	0.89[ASN][1000 genomes]
rs7028680	0.89[ASN][1000 genomes]
rs7028973	0.89[ASN][1000 genomes]
rs7031308	0.89[ASN][1000 genomes]
rs7045895	0.89[ASN][1000 genomes]
rs7048214	0.89[ASN][1000 genomes]
rs7847667	0.86[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs7847940	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs7855531	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs7855869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7861318	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7862440	0.86[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs7862799	0.85[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs7863077	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs7864774	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7865450	0.84[ASN][1000 genomes]
rs7873530	0.86[ASN][1000 genomes]
rs7873539	0.86[ASN][1000 genomes]
rs7873917	0.86[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73427600-73483400	Weak transcription	Aorta	Aorta
2	chr9:73438600-73449000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:73438600-73456800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:73442200-73459800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr9:73443000-73453400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr9:73445200-73449000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr9:73447400-73449200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr9:73447800-73449200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr9:73448000-73449600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:73448200-73449400	Weak transcription	NHDF-Ad	bronchial
11	chr9:73448200-73449600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:73448200-73454800	Weak transcription	Gastric	stomach
13	chr9:73448200-73473600	Weak transcription	Fetal Kidney	kidney
14	chr9:73448400-73459200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr9:73448400-73469000	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr9:73448600-73457000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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