Variant report

Variant	rs2275242
Chromosome Location	chr9:73448055-73448056
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10117842	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10118452	0.89[ASN][1000 genomes]
rs10118602	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10119412	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs10120927	0.89[ASN][1000 genomes]
rs10121000	0.89[ASN][1000 genomes]
rs10121631	0.89[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs10122559	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs10124944	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs1034542	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1034543	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10746856	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs10780971	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10780972	0.87[ASN][1000 genomes]
rs10780974	1.00[CHB][hapmap]
rs10780975	1.00[CHB][hapmap];0.96[CHD][hapmap];0.89[ASN][1000 genomes]
rs10780976	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs10780977	0.89[ASN][1000 genomes]
rs10780978	1.00[CHB][hapmap];0.96[CHD][hapmap];0.89[ASN][1000 genomes]
rs10780980	0.86[ASN][1000 genomes]
rs10780981	0.86[ASN][1000 genomes]
rs10868894	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10868899	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10868902	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868903	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868904	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs10868905	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs10868906	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs10868907	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs10868909	0.96[CHD][hapmap]
rs10868910	0.89[CEU][hapmap];0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs10868911	0.89[ASN][1000 genomes]
rs10868914	0.89[ASN][1000 genomes]
rs10868915	0.89[ASN][1000 genomes]
rs10868916	0.99[ASN][1000 genomes]
rs10868917	0.89[ASN][1000 genomes]
rs10868918	0.89[ASN][1000 genomes]
rs10868919	0.89[ASN][1000 genomes]
rs10868920	0.89[ASN][1000 genomes]
rs11142611	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142612	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142614	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs11142618	0.89[ASN][1000 genomes]
rs11142619	0.89[ASN][1000 genomes]
rs11142625	0.89[ASN][1000 genomes]
rs12380236	0.89[ASN][1000 genomes]
rs1337025	0.86[ASN][1000 genomes]
rs1337026	0.89[ASN][1000 genomes]
rs1337027	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1337028	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs1337030	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs1337031	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1337032	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1415222	0.86[ASN][1000 genomes]
rs1415223	0.86[ASN][1000 genomes]
rs1415224	0.87[ASN][1000 genomes]
rs1415228	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1415229	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1415230	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1415231	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1932926	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2039640	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2039641	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2039645	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2993010	0.84[TSI][hapmap]
rs34543029	0.89[ASN][1000 genomes]
rs35672482	0.82[AFR][1000 genomes]
rs4112753	0.89[ASN][1000 genomes]
rs4351476	0.89[ASN][1000 genomes]
rs6560156	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6560157	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6560158	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6560159	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs6560160	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs6560161	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs6560162	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs6560163	0.89[ASN][1000 genomes]
rs6560165	0.89[ASN][1000 genomes]
rs6560166	0.89[ASN][1000 genomes]
rs7022926	0.89[CEU][hapmap];0.92[LWK][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.85[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7027846	0.93[EUR][1000 genomes]
rs7028011	0.89[ASN][1000 genomes]
rs7028142	0.89[ASN][1000 genomes]
rs7028680	0.89[ASN][1000 genomes]
rs7028973	0.89[ASN][1000 genomes]
rs7031308	0.89[ASN][1000 genomes]
rs7045895	0.89[ASN][1000 genomes]
rs7048214	0.89[ASN][1000 genomes]
rs7847667	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7847940	0.89[CEU][hapmap];0.81[MKK][hapmap];0.91[TSI][hapmap];0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7855531	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7855869	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7861318	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7862440	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7862799	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7863077	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7864774	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7865450	0.84[ASN][1000 genomes]
rs7873530	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs7873539	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs7873917	1.00[CHB][hapmap];0.86[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2275242	C9orf135	cis	parietal	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73427600-73483400	Weak transcription	Aorta	Aorta
2	chr9:73438600-73449000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:73438600-73456800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:73442200-73459800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr9:73443000-73453400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr9:73444000-73448600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr9:73445200-73449000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr9:73446600-73448200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:73447200-73448200	Enhancers	NHDF-Ad	bronchial
10	chr9:73447200-73448400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr9:73447400-73448400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr9:73447400-73449200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr9:73447800-73449200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr9:73448000-73448200	Enhancers	Fetal Kidney	kidney
15	chr9:73448000-73449600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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