Variant report

Variant	rs10780977
Chromosome Location	chr9:73465888-73465889
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10118452	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10118602	0.89[ASN][1000 genomes]
rs10120927	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10121000	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1034539	0.89[ASN][1000 genomes]
rs10511987	0.86[ASN][1000 genomes]
rs10780975	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10780976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10780978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10780980	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10780981	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10868895	0.88[ASN][1000 genomes]
rs10868896	0.89[ASN][1000 genomes]
rs10868897	0.89[ASN][1000 genomes]
rs10868898	0.89[ASN][1000 genomes]
rs10868900	0.89[ASN][1000 genomes]
rs10868901	0.89[ASN][1000 genomes]
rs10868902	0.89[ASN][1000 genomes]
rs10868903	0.89[ASN][1000 genomes]
rs10868908	0.89[ASN][1000 genomes]
rs10868909	0.89[ASN][1000 genomes]
rs10868911	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868914	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868915	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868916	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10868917	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868918	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868919	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868920	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868921	0.86[ASN][1000 genomes]
rs11142603	0.89[ASN][1000 genomes]
rs11142605	0.89[ASN][1000 genomes]
rs11142607	0.89[ASN][1000 genomes]
rs11142609	0.86[ASN][1000 genomes]
rs11142611	0.89[ASN][1000 genomes]
rs11142612	0.89[ASN][1000 genomes]
rs11142613	0.89[ASN][1000 genomes]
rs11142618	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142619	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142620	0.89[ASN][1000 genomes]
rs11142625	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142626	0.89[ASN][1000 genomes]
rs11142627	0.89[ASN][1000 genomes]
rs11142629	0.86[ASN][1000 genomes]
rs11998936	0.83[AFR][1000 genomes]
rs12378267	0.89[ASN][1000 genomes]
rs12379273	0.89[ASN][1000 genomes]
rs12380236	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1337025	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1337026	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1337029	0.89[ASN][1000 genomes]
rs1337032	0.89[ASN][1000 genomes]
rs1415222	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1415223	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1415224	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1415228	0.86[ASN][1000 genomes]
rs1415229	0.89[ASN][1000 genomes]
rs1415230	0.86[ASN][1000 genomes]
rs1415231	0.88[ASN][1000 genomes]
rs17470958	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1932926	0.89[ASN][1000 genomes]
rs2011851	0.89[ASN][1000 genomes]
rs2011853	0.89[ASN][1000 genomes]
rs2039640	0.89[ASN][1000 genomes]
rs2039641	0.89[ASN][1000 genomes]
rs2039645	0.89[ASN][1000 genomes]
rs2275242	0.89[ASN][1000 genomes]
rs28394660	0.89[ASN][1000 genomes]
rs28607835	0.89[ASN][1000 genomes]
rs34543029	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4112753	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4351476	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4412420	0.94[EUR][1000 genomes]
rs4443722	0.89[ASN][1000 genomes]
rs505107	0.94[EUR][1000 genomes]
rs506067	0.93[EUR][1000 genomes]
rs532855	0.94[EUR][1000 genomes]
rs564929	0.94[EUR][1000 genomes]
rs6560156	0.89[ASN][1000 genomes]
rs6560157	0.89[ASN][1000 genomes]
rs6560158	0.89[ASN][1000 genomes]
rs6560163	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6560165	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6560166	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7028011	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7028142	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7028680	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7028973	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7031308	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7045895	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7048214	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs718005	0.89[ASN][1000 genomes]
rs7855869	0.89[ASN][1000 genomes]
rs7861318	0.89[ASN][1000 genomes]
rs7873530	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7873539	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7873917	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1803911	chr9:73461480-73466355	Strong transcription Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1813440	chr9:73461480-73466355	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73427600-73483400	Weak transcription	Aorta	Aorta
2	chr9:73448200-73473600	Weak transcription	Fetal Kidney	kidney
3	chr9:73448400-73469000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr9:73450600-73477600	Weak transcription	Ovary	ovary
5	chr9:73452000-73469600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr9:73455600-73480600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:73457200-73485200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:73457800-73480600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr9:73461400-73482000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr9:73463600-73471000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:73463600-73472800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr9:73465400-73466200	Enhancers	Fetal Heart	heart
13	chr9:73465600-73466000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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