Variant report

Variant	rs2011851
Chromosome Location	chr9:73442413-73442414
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10117842	0.88[ASN][1000 genomes]
rs10118452	0.89[ASN][1000 genomes]
rs10120927	0.89[ASN][1000 genomes]
rs10121000	0.89[ASN][1000 genomes]
rs1034539	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1034542	0.87[ASN][1000 genomes]
rs1034543	0.88[ASN][1000 genomes]
rs10511987	0.97[ASN][1000 genomes]
rs10780971	0.88[ASN][1000 genomes]
rs10780972	0.85[ASN][1000 genomes]
rs10780974	1.00[JPT][hapmap]
rs10780975	0.92[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10780976	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10780977	0.89[ASN][1000 genomes]
rs10780978	0.92[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10780980	0.87[ASN][1000 genomes]
rs10780981	0.87[ASN][1000 genomes]
rs10868894	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs10868895	0.98[ASN][1000 genomes]
rs10868896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868897	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10868898	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10868899	0.88[ASN][1000 genomes]
rs10868900	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10868901	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10868908	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868909	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868911	0.89[ASN][1000 genomes]
rs10868914	0.89[ASN][1000 genomes]
rs10868915	0.89[ASN][1000 genomes]
rs10868917	0.89[ASN][1000 genomes]
rs10868918	0.89[ASN][1000 genomes]
rs10868919	0.89[ASN][1000 genomes]
rs10868920	0.89[ASN][1000 genomes]
rs10868921	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11142603	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11142605	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11142607	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142609	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11142613	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142618	0.89[ASN][1000 genomes]
rs11142619	0.89[ASN][1000 genomes]
rs11142620	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142625	0.89[ASN][1000 genomes]
rs11142626	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142627	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142629	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12378267	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12379273	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12380236	0.89[ASN][1000 genomes]
rs1337025	0.87[ASN][1000 genomes]
rs1337026	0.89[ASN][1000 genomes]
rs1337029	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1415222	0.87[ASN][1000 genomes]
rs1415223	0.87[ASN][1000 genomes]
rs1415224	0.88[ASN][1000 genomes]
rs17470958	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2011853	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28394660	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28607835	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34543029	0.89[ASN][1000 genomes]
rs4112753	0.89[ASN][1000 genomes]
rs4351476	0.89[ASN][1000 genomes]
rs4443722	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs529897	0.98[EUR][1000 genomes]
rs6560163	0.89[ASN][1000 genomes]
rs6560165	0.89[ASN][1000 genomes]
rs6560166	0.89[ASN][1000 genomes]
rs7028011	0.89[ASN][1000 genomes]
rs7028142	0.89[ASN][1000 genomes]
rs7028680	0.89[ASN][1000 genomes]
rs7028973	0.89[ASN][1000 genomes]
rs7031308	0.89[ASN][1000 genomes]
rs7045895	0.89[ASN][1000 genomes]
rs7048214	0.89[ASN][1000 genomes]
rs718005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7864774	0.88[ASN][1000 genomes]
rs7873530	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7873539	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7873917	1.00[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv13599	chr9:73442098-73444722	Enhancers Strong transcription Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73418200-73444000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr9:73418200-73447400	Weak transcription	Fetal Kidney	kidney
3	chr9:73427600-73483400	Weak transcription	Aorta	Aorta
4	chr9:73437400-73447200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr9:73438200-73444800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr9:73438600-73444800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr9:73438600-73449000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:73438600-73456800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:73439000-73445000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr9:73440400-73443000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr9:73440400-73447200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr9:73442000-73442600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr9:73442000-73443000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:73442000-73443200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr9:73442200-73459800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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