Variant report

Variant	rs10868907
Chromosome Location	chr9:73461558-73461559
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10118602	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs10119412	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10121631	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10122559	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10124944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10746856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868902	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs10868903	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs10868904	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868905	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868906	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11142611	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs11142612	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs11142614	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1337027	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1337028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1337030	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1337031	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1337032	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs1415228	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs1415229	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs1415230	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1415231	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs1932926	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs2039640	0.86[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs2039641	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs2039645	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs2275242	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs6560156	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs6560157	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs6560158	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs6560159	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6560160	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6560161	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6560162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7022926	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7027846	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7847667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7847940	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7855531	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7855869	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7861318	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7862440	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7862799	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7863077	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1803911	chr9:73461480-73466355	Strong transcription Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1813440	chr9:73461480-73466355	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73427600-73483400	Weak transcription	Aorta	Aorta
2	chr9:73448200-73473600	Weak transcription	Fetal Kidney	kidney
3	chr9:73448400-73469000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr9:73450600-73477600	Weak transcription	Ovary	ovary
5	chr9:73452000-73469600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr9:73455600-73480600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:73456000-73461800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:73457200-73485200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:73457800-73480600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr9:73460000-73461800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr9:73461200-73461800	Enhancers	Fetal Intestine Large	intestine
12	chr9:73461400-73482000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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