Variant report

Variant	rs10869360
Chromosome Location	chr9:71437254-71437255
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:71424350..71426384-chr9:71436426..71438854,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10511962	0.81[AMR][1000 genomes]
rs10511963	1.00[CEU][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10781227	0.81[AMR][1000 genomes]
rs10869365	0.89[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10869396	0.81[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10869401	0.81[AMR][1000 genomes]
rs10869403	0.81[CEU][hapmap];0.83[AMR][1000 genomes]
rs10869407	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10869419	0.85[AMR][1000 genomes]
rs11792022	0.81[AMR][1000 genomes]
rs2027025	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4504703	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs4745237	0.90[EUR][1000 genomes]
rs4745268	0.84[EUR][1000 genomes]
rs4745295	0.94[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6560391	0.81[AMR][1000 genomes]
rs6560392	0.81[AMR][1000 genomes]
rs7031640	0.95[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7033278	0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7035163	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs7856247	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7857352	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7864097	0.95[CEU][hapmap];0.91[EUR][1000 genomes]
rs7874714	0.80[CEU][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs944856	0.89[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs952589	0.89[CEU][hapmap];0.90[EUR][1000 genomes]
rs9776840	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032210	chr9:71130848-71511987	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv2422258	chr9:71234845-71663340	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1017903	chr9:71276951-71690579	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1051723	chr9:71398713-71971285	Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv1053402	chr9:71399722-71819949	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	nsv540146	chr9:71399722-71819949	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
7	nsv1043689	chr9:71399922-71800338	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	nsv540147	chr9:71399922-71800338	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
9	nsv1047540	chr9:71401918-71803639	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
10	nsv1050741	chr9:71405224-71450033	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv540148	chr9:71405224-71450033	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv931684	chr9:71417110-71957723	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
13	nsv1049175	chr9:71418242-71986910	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
14	nsv6548	chr9:71429527-71470917	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71414000-71445000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr9:71418600-71444800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr9:71421000-71437600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:71421200-71437600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr9:71421400-71443000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr9:71422600-71438200	Weak transcription	GM12878-XiMat	blood
7	chr9:71422600-71441000	Weak transcription	Fetal Stomach	stomach
8	chr9:71425000-71448600	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr9:71432200-71437600	Weak transcription	Aorta	Aorta
10	chr9:71432400-71440200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr9:71432800-71445600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:71433400-71449000	Weak transcription	HepG2	liver
13	chr9:71434400-71443600	Strong transcription	Primary B cells from peripheral blood	blood
14	chr9:71435600-71440400	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr9:71435800-71437600	Weak transcription	Primary B cells from cord blood	blood
16	chr9:71435800-71464800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:71436200-71441200	Weak transcription	Fetal Intestine Small	intestine
18	chr9:71436400-71439200	Strong transcription	Fetal Intestine Large	intestine
19	chr9:71436600-71437400	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr9:71436600-71437600	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr9:71436600-71438000	Enhancers	K562	blood
22	chr9:71437000-71438000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr9:71437000-71438000	Enhancers	Left Ventricle	heart
24	chr9:71437000-71438000	Enhancers	Small Intestine	intestine
25	chr9:71437200-71437800	Enhancers	Stomach Mucosa	stomach
26	chr9:71437200-71438000	Enhancers	Fetal Heart	heart

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