Variant report

Variant	rs10872109
Chromosome Location	chr6:114135441-114135442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11153446	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11153447	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11153450	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11757604	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12205735	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1462381	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4945974	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6909293	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9372380	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9384884	0.80[EUR][1000 genomes]
rs9400673	0.80[EUR][1000 genomes]
rs959619	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv3363275	chr6:114101331-114302866	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114133800-114135600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:114134000-114135600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:114134000-114135600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr6:114134200-114135600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:114134200-114135600	Enhancers	HSMM	muscle
6	chr6:114134200-114135600	Enhancers	NH-A	brain
7	chr6:114134600-114146400	Weak transcription	Stomach Mucosa	stomach
8	chr6:114134800-114135600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:114134800-114138800	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr6:114135000-114140000	Weak transcription	Fetal Lung	lung
11	chr6:114135200-114139600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:114135400-114135600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:114135400-114136000	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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