Variant report

Variant	rs12205735
Chromosome Location	chr6:114127486-114127487
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10872108	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10872109	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11153442	0.85[ASN][1000 genomes]
rs11153443	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11153444	0.81[ASN][1000 genomes]
rs11153446	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11153447	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153450	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11757604	0.92[EUR][1000 genomes]
rs12202789	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1462381	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1980375	0.95[CHB][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2348532	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4034906	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4089883	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4945974	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6909293	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6919507	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs7764655	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7773346	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9372379	0.95[CHB][hapmap];0.82[YRI][hapmap];0.84[ASN][1000 genomes]
rs9372380	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9374428	0.84[ASN][1000 genomes]
rs9384884	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9400673	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs954620	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs959619	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv3363275	chr6:114101331-114302866	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114125000-114132600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr6:114125600-114132400	Enhancers	Primary B cells from peripheral blood	blood
3	chr6:114126200-114127800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr6:114126400-114127600	Enhancers	Rectal Mucosa Donor 29	rectum
5	chr6:114126600-114127600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:114126600-114127600	Enhancers	Brain Hippocampus Middle	brain
7	chr6:114126600-114127800	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr6:114126800-114127600	Enhancers	Primary B cells from cord blood	blood
9	chr6:114126800-114127600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr6:114126800-114127600	Enhancers	Ovary	ovary
11	chr6:114126800-114127600	Enhancers	Psoas Muscle	Psoas
12	chr6:114127000-114129400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr6:114127200-114127600	Enhancers	Fetal Muscle Leg	muscle
14	chr6:114127400-114127800	Enhancers	GM12878-XiMat	blood

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