Variant report

Variant	rs10872168
Chromosome Location	chr6:119030901-119030902
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:119029203..119032181-chr6:119214720..119218048,3	K562	blood:
2	chr6:118969568..118974185-chr6:119029207..119033276,8	K562	blood:
3	chr6:118984312..118986553-chr6:119029407..119031346,2	K562	blood:
4	chr6:118972255..118975649-chr6:119030496..119033791,4	K562	blood:

Variant related genes	Relation type
ENSG00000111860	Chromatin interaction
ENSG00000111877	Chromatin interaction
ENSG00000111875	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11153771	0.92[CEU][hapmap];1.00[CHB][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11153772	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11153773	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11961110	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17348534	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1025403	chr6:118635123-119122551	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1025456	chr6:118669672-119058789	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1027444	chr6:118687556-119121660	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv538428	chr6:118687556-119121660	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv949321	chr6:118692304-119137658	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
8	nsv1025097	chr6:118699752-119058789	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
9	nsv532052	chr6:118711850-119057295	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
10	nsv604556	chr6:118722589-119065365	Active TSS Strong transcription Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
11	nsv949416	chr6:118772508-119033063	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
12	nsv948980	chr6:118772508-119137658	Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
13	nsv604559	chr6:118786486-119113317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
14	nsv1022865	chr6:118786586-119058789	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
15	nsv1020405	chr6:118786586-119241006	ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
16	nsv830788	chr6:119014021-119143652	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
17	nsv1023826	chr6:119026481-119221408	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119027400-119031200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr6:119028400-119040600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:119029000-119031200	Active TSS	K562	blood
4	chr6:119029400-119031400	Flanking Active TSS	HMEC	breast
5	chr6:119029400-119031600	Active TSS	Rectal Mucosa Donor 29	rectum
6	chr6:119029400-119031600	Flanking Active TSS	Osteobl	bone
7	chr6:119029600-119031000	Active TSS	GM12878-XiMat	blood
8	chr6:119029600-119031200	Active TSS	Thymus	Thymus
9	chr6:119029600-119031200	Weak transcription	Spleen	Spleen
10	chr6:119029600-119031400	Active TSS	Primary T cells fromperipheralblood	blood
11	chr6:119029600-119031400	Active TSS	Primary T killer memory cells from peripheral blood	blood
12	chr6:119029600-119031400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:119029600-119031400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:119029600-119031600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:119029600-119033000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:119029800-119031000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
17	chr6:119029800-119031000	Active TSS	A549	lung
18	chr6:119029800-119031200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr6:119029800-119031200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:119029800-119031200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
21	chr6:119029800-119031200	Flanking Active TSS	HUVEC	blood vessel
22	chr6:119029800-119031200	Active TSS	NHLF	lung
23	chr6:119029800-119031400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:119029800-119031400	Active TSS	Primary T cells from cord blood	blood
25	chr6:119029800-119031400	Flanking Active TSS	Primary hematopoietic stem cells	blood
26	chr6:119029800-119031400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr6:119029800-119031400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
28	chr6:119029800-119031400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
29	chr6:119029800-119031400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr6:119029800-119031400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr6:119029800-119031600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr6:119030000-119031000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr6:119030000-119031000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr6:119030000-119031000	Flanking Active TSS	Brain Cingulate Gyrus	brain
35	chr6:119030000-119031000	Flanking Active TSS	Brain Hippocampus Middle	brain
36	chr6:119030000-119031000	Flanking Active TSS	Fetal Brain Female	brain
37	chr6:119030000-119031000	Flanking Active TSS	Hela-S3	cervix
38	chr6:119030000-119031200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
39	chr6:119030000-119031400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
40	chr6:119030000-119031400	Active TSS	Primary T helper naive cells from peripheral blood	blood
41	chr6:119030000-119031400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
42	chr6:119030000-119031400	Active TSS	Stomach Smooth Muscle	stomach
43	chr6:119030000-119031600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr6:119030000-119031600	Flanking Active TSS	Fetal Brain Male	brain
45	chr6:119030200-119031000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
46	chr6:119030200-119031000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
47	chr6:119030200-119031000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
48	chr6:119030200-119031000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr6:119030200-119031000	Flanking Active TSS	Adipose Nuclei	Adipose
50	chr6:119030200-119031000	Flanking Active TSS	Brain Angular Gyrus	brain

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