Variant report

Variant	rs11961110
Chromosome Location	chr6:119033447-119033448
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:118972255..118975649-chr6:119030496..119033791,4	K562	blood:
2	chr6:118970545..118972377-chr6:119033430..119035366,2	K562	blood:

Variant related genes	Relation type
ENSG00000111860	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10872168	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11153771	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153772	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153773	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13214336	0.84[YRI][hapmap]
rs17348534	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1025403	chr6:118635123-119122551	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1025456	chr6:118669672-119058789	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1027444	chr6:118687556-119121660	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv538428	chr6:118687556-119121660	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv949321	chr6:118692304-119137658	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
8	nsv1025097	chr6:118699752-119058789	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
9	nsv532052	chr6:118711850-119057295	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
10	nsv604556	chr6:118722589-119065365	Active TSS Strong transcription Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
11	nsv948980	chr6:118772508-119137658	Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
12	nsv604559	chr6:118786486-119113317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
13	nsv1022865	chr6:118786586-119058789	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
14	nsv1020405	chr6:118786586-119241006	ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
15	nsv830788	chr6:119014021-119143652	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
16	nsv1023826	chr6:119026481-119221408	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119028400-119040600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:119031400-119035400	Enhancers	Fetal Thymus	thymus
3	chr6:119031600-119033800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:119031600-119034000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:119031600-119034600	Enhancers	Primary T cells fromperipheralblood	blood
6	chr6:119031600-119034600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr6:119031600-119035000	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr6:119031600-119036200	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr6:119031600-119039200	Weak transcription	Fetal Muscle Leg	muscle
10	chr6:119031600-119040200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:119031600-119040400	Weak transcription	Psoas Muscle	Psoas
12	chr6:119031600-119044400	Weak transcription	Fetal Heart	heart
13	chr6:119031600-119045600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr6:119031800-119033800	Weak transcription	NHEK	skin
15	chr6:119031800-119034000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:119031800-119034000	Weak transcription	HSMMtube	muscle
17	chr6:119031800-119034200	Weak transcription	HSMM	muscle
18	chr6:119031800-119034600	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr6:119031800-119036400	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr6:119032000-119033800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:119032000-119033800	Weak transcription	NH-A	brain
22	chr6:119032000-119033800	Weak transcription	NHDF-Ad	bronchial
23	chr6:119032000-119034200	Weak transcription	Brain Anterior Caudate	brain
24	chr6:119032000-119034200	Weak transcription	Brain Substantia Nigra	brain
25	chr6:119032000-119034200	Weak transcription	Duodenum Mucosa	Duodenum
26	chr6:119032000-119034800	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr6:119032000-119037000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr6:119032000-119040000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr6:119032200-119033800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:119032200-119033800	Weak transcription	Brain Hippocampus Middle	brain
31	chr6:119032200-119033800	Weak transcription	Osteobl	bone
32	chr6:119032200-119034000	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr6:119032200-119034000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr6:119032200-119034000	Weak transcription	Brain Angular Gyrus	brain
35	chr6:119032200-119034000	Weak transcription	Brain Cingulate Gyrus	brain
36	chr6:119032200-119034200	Weak transcription	NHLF	lung
37	chr6:119032200-119034400	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr6:119032200-119034800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
39	chr6:119032200-119035000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr6:119032200-119035200	Enhancers	Primary T cells from cord blood	blood
41	chr6:119032200-119035600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr6:119032200-119035800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr6:119032400-119036400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr6:119032800-119033800	Weak transcription	HMEC	breast
45	chr6:119033000-119033800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr6:119033000-119034200	Weak transcription	Thymus	Thymus
47	chr6:119033000-119035400	Enhancers	Primary T helper cells PMA-I stimulated	--
48	chr6:119033200-119033600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr6:119033200-119039400	Weak transcription	Dnd41	blood
50	chr6:119033200-119039400	Weak transcription	K562	blood

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