Variant report

Variant	rs10872386
Chromosome Location	chr6:132281864-132281865
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:132269655-132282174..6:132454814-132459405	GM12878	blood:
2	6:132269655-132282174..6:132434977-132438109	Hela-S3	cervix:
3	chr6:132281702..132282383-chr6:132538997..132539850,2	MCF-7	breast:
4	6:132269655-132282174..6:132402790-132406656	H1-hESC	embryonic stem cell:	embryo
5	6:132269655-132282174..6:132480387-132483283	H1-hESC	embryonic stem cell:	embryo

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ENPP1-5	chr6:132281283-132283398	NONHSAT114933

Variant related genes	Relation type
ENSG00000228495	Chromatin interaction
ENSG00000236166	Chromatin interaction
ENSG00000265669	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10872387	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11154654	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12055428	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12192101	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12192108	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12212771	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12663962	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1930994	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1931001	0.97[ASN][1000 genomes]
rs2027034	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4452668	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7747551	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7768193	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9388952	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9402376	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9402377	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs975445	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132275600-132299800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:132276200-132287400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:132276400-132282000	Weak transcription	Aorta	Aorta
4	chr6:132276600-132297800	Weak transcription	Ovary	ovary
5	chr6:132277000-132287800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr6:132277200-132287600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:132277400-132287600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:132277400-132291200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr6:132277400-132305600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:132279400-132282200	Enhancers	Liver	Liver
11	chr6:132280000-132282200	Enhancers	HepG2	liver
12	chr6:132280000-132284000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:132280400-132282000	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr6:132280800-132293800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr6:132281400-132282200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:132281400-132282200	Enhancers	HUVEC	blood vessel
17	chr6:132281400-132282400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:132281600-132282200	Enhancers	Osteobl	bone
19	chr6:132281600-132284800	Weak transcription	Stomach Mucosa	stomach
20	chr6:132281800-132282000	Enhancers	Fetal Brain Male	brain
21	chr6:132281800-132282200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:132281800-132282200	Enhancers	Muscle Satellite Cultured Cells	--
23	chr6:132281800-132282400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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