Variant report

Variant	rs4452668
Chromosome Location	chr6:132299748-132299749
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10872386	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10872387	0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11154654	0.94[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11154656	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12055428	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12192101	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12192108	0.94[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.81[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12202729	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.96[MKK][hapmap];0.83[TSI][hapmap];0.87[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12212771	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12214274	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12663962	0.88[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1930994	0.94[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1931001	1.00[CHB][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs2022390	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2022391	0.88[CEU][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2027034	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7747551	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.86[TSI][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7768193	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9373005	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9373006	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9375854	1.00[ASW][hapmap];0.94[CEU][hapmap];0.85[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.93[MKK][hapmap];0.94[TSI][hapmap];0.87[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9385593	0.81[AFR][1000 genomes]
rs9388952	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9402376	0.94[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9402377	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9402380	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9402381	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9402382	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9402383	0.81[TSI][hapmap]
rs975445	0.94[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv470861	chr6:132291785-132351866	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv886672	chr6:132299748-132349215	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv886673	chr6:132299748-132363507	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132275600-132299800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:132277400-132305600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr6:132292800-132301600	Weak transcription	Stomach Mucosa	stomach
4	chr6:132296600-132304400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:132296800-132301400	Weak transcription	Fetal Kidney	kidney
6	chr6:132297000-132305400	Enhancers	Liver	Liver
7	chr6:132298000-132299800	Weak transcription	HUVEC	blood vessel
8	chr6:132298000-132303000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:132298200-132300800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:132298200-132302200	Weak transcription	Right Atrium	heart
11	chr6:132298200-132302800	Weak transcription	Ovary	ovary
12	chr6:132298200-132319000	Weak transcription	Aorta	Aorta
13	chr6:132298400-132299800	Enhancers	HepG2	liver
14	chr6:132298400-132300800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:132298400-132301400	Weak transcription	Fetal Intestine Small	intestine
16	chr6:132298400-132301600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:132298600-132299800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr6:132298600-132300800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:132298600-132301000	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr6:132298800-132301200	Weak transcription	Colon Smooth Muscle	Colon
21	chr6:132299000-132300600	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr6:132299200-132300800	Weak transcription	Osteobl	bone
23	chr6:132299200-132301200	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr6:132299600-132299800	Enhancers	NHLF	lung
25	chr6:132299600-132300000	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links