Variant report

Variant	rs10872407
Chromosome Location	chr6:133841944-133841945
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs212771	0.81[EUR][1000 genomes]
rs212775	0.86[ASN][1000 genomes]
rs212776	0.86[ASN][1000 genomes]
rs212777	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2277083	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3822939	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs478907	0.88[ASN][1000 genomes]
rs561826	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs598286	0.82[EUR][1000 genomes]
rs598699	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs667955	0.81[EUR][1000 genomes]
rs6913726	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9385650	0.91[ASN][1000 genomes]
rs9483586	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886681	chr6:133833284-133869617	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133823200-133869600	Weak transcription	Psoas Muscle	Psoas
2	chr6:133824200-133854200	Weak transcription	Fetal Muscle Leg	muscle
3	chr6:133824400-133854800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:133824400-133861600	Weak transcription	Ovary	ovary
5	chr6:133825600-133857200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr6:133826400-133844800	Weak transcription	Fetal Kidney	kidney
7	chr6:133826600-133862400	Weak transcription	Fetal Lung	lung
8	chr6:133836800-133854000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr6:133837400-133863600	Weak transcription	A549	lung
10	chr6:133839000-133846800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:133839200-133846000	Weak transcription	Hela-S3	cervix
12	chr6:133839600-133844800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:133839800-133846000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links