Variant report

Variant	rs598699
Chromosome Location	chr6:133811522-133811523
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10872407	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs212765	0.85[EUR][1000 genomes]
rs212771	0.92[EUR][1000 genomes]
rs212773	0.86[EUR][1000 genomes]
rs212774	0.86[EUR][1000 genomes]
rs212775	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs212776	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs212777	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2277083	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3822939	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs478907	0.81[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs561826	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs598286	0.93[EUR][1000 genomes]
rs667890	0.84[EUR][1000 genomes]
rs667955	0.87[EUR][1000 genomes]
rs6913726	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9385650	0.93[ASN][1000 genomes]
rs9483586	0.94[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133765800-133822000	Weak transcription	Psoas Muscle	Psoas
2	chr6:133782000-133811600	Weak transcription	A549	lung
3	chr6:133784000-133813000	Weak transcription	HSMMtube	muscle
4	chr6:133786600-133812400	Weak transcription	Fetal Kidney	kidney
5	chr6:133787400-133822800	Weak transcription	Fetal Lung	lung
6	chr6:133790800-133821600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr6:133808600-133822000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:133809000-133812200	Strong transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:133809600-133816800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:133809800-133811600	Weak transcription	Fetal Muscle Trunk	muscle
11	chr6:133810200-133820800	Weak transcription	Fetal Muscle Leg	muscle
12	chr6:133810200-133821400	Weak transcription	Hela-S3	cervix
13	chr6:133811400-133814200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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