Variant report

Variant	rs212773
Chromosome Location	chr6:133801100-133801101
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs212765	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs212766	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs212771	0.92[EUR][1000 genomes]
rs212774	1.00[CEU][hapmap];0.87[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs212775	0.90[EUR][1000 genomes]
rs212776	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs212777	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs2277083	0.83[CEU][hapmap];0.86[EUR][1000 genomes]
rs3822939	0.84[CEU][hapmap]
rs561826	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs568911	0.87[JPT][hapmap]
rs598286	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs598699	0.86[EUR][1000 genomes]
rs667890	0.86[EUR][1000 genomes]
rs667955	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6913726	0.84[CEU][hapmap];0.87[EUR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133765800-133822000	Weak transcription	Psoas Muscle	Psoas
2	chr6:133782000-133811600	Weak transcription	A549	lung
3	chr6:133782400-133806400	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:133784000-133813000	Weak transcription	HSMMtube	muscle
5	chr6:133786600-133812400	Weak transcription	Fetal Kidney	kidney
6	chr6:133786800-133807400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr6:133787400-133822800	Weak transcription	Fetal Lung	lung
8	chr6:133790800-133807800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:133790800-133821600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:133795000-133808400	Weak transcription	Left Ventricle	heart
11	chr6:133795600-133802000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:133797200-133801200	Weak transcription	Hela-S3	cervix
13	chr6:133797400-133803200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:133797800-133801200	Weak transcription	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links