Variant report

Variant	rs10873310
Chromosome Location	chr14:78092464-78092465
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10132804	0.81[ASN][1000 genomes]
rs10139421	0.81[ASN][1000 genomes]
rs11159282	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11159285	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12050437	0.96[ASN][1000 genomes]
rs12050439	0.96[ASN][1000 genomes]
rs12432127	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12435993	0.81[ASN][1000 genomes]
rs12586560	0.94[ASN][1000 genomes]
rs12590445	0.88[ASN][1000 genomes]
rs12590759	0.96[ASN][1000 genomes]
rs12590776	0.96[ASN][1000 genomes]
rs12878099	0.81[ASN][1000 genomes]
rs12879146	0.94[ASN][1000 genomes]
rs12880698	0.91[ASN][1000 genomes]
rs12881338	1.00[ASN][1000 genomes]
rs12881530	0.92[ASN][1000 genomes]
rs12886970	0.92[ASN][1000 genomes]
rs12889224	0.94[ASN][1000 genomes]
rs12898009	0.94[ASN][1000 genomes]
rs34140630	0.94[ASN][1000 genomes]
rs34567686	0.94[ASN][1000 genomes]
rs35636868	0.94[ASN][1000 genomes]
rs4899664	1.00[ASN][1000 genomes]
rs4903619	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4903620	0.96[ASN][1000 genomes]
rs56812919	0.84[ASN][1000 genomes]
rs67838524	0.94[ASN][1000 genomes]
rs71428789	0.94[ASN][1000 genomes]
rs7149026	0.97[ASN][1000 genomes]
rs7153483	0.84[ASN][1000 genomes]
rs7155602	0.83[ASN][1000 genomes]
rs8004037	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832835	chr14:77906706-78095207	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1053810	chr14:77987871-78148320	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv1051554	chr14:78004196-78122980	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv2758362	chr14:78074180-78262572	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	esv2759998	chr14:78074180-78262572	Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78089600-78093200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links