Variant report

Variant	rs4899664
Chromosome Location	chr14:78091503-78091504
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:78089083..78091908-chr14:78093524..78096413,2	K562	blood:
2	chr14:78084682..78086712-chr14:78089540..78091757,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10132804	0.81[ASN][1000 genomes]
rs10139421	0.87[CHB][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs10873310	1.00[ASN][1000 genomes]
rs11159282	1.00[ASN][1000 genomes]
rs11159285	0.97[ASN][1000 genomes]
rs12050437	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12050439	0.96[ASN][1000 genomes]
rs12432127	0.97[ASN][1000 genomes]
rs12435993	0.87[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs12586560	0.91[CEU][hapmap];0.88[CHB][hapmap];0.94[ASN][1000 genomes]
rs12590445	0.88[ASN][1000 genomes]
rs12590759	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12590776	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12878099	0.94[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs12879146	0.94[ASN][1000 genomes]
rs12880698	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12881338	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12881530	0.88[CHB][hapmap];0.92[ASN][1000 genomes]
rs12886970	0.92[ASN][1000 genomes]
rs12889224	0.94[ASN][1000 genomes]
rs12898009	0.88[CHB][hapmap];0.94[ASN][1000 genomes]
rs34140630	0.94[ASN][1000 genomes]
rs34567686	0.94[ASN][1000 genomes]
rs35636868	0.94[ASN][1000 genomes]
rs4903619	0.97[ASN][1000 genomes]
rs4903620	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs56812919	0.84[ASN][1000 genomes]
rs67838524	0.94[ASN][1000 genomes]
rs71428789	0.94[ASN][1000 genomes]
rs7149026	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7153483	0.84[ASN][1000 genomes]
rs7155602	0.92[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8004037	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832835	chr14:77906706-78095207	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1053810	chr14:77987871-78148320	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv1051554	chr14:78004196-78122980	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv2758362	chr14:78074180-78262572	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	esv2759998	chr14:78074180-78262572	Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78083800-78091600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr14:78089600-78093200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr14:78091400-78091800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr14:78091400-78092200	Enhancers	Primary T cells from cord blood	blood

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