Variant report

Variant	rs10873477
Chromosome Location	chr14:97362657-97362658
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:97352755..97357017-chr14:97358100..97363870,8	K562	blood:
2	chr14:97355083..97357318-chr14:97362370..97365310,3	K562	blood:
3	chr14:97361735..97363955-chr14:97364281..97368470,3	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10873476	0.95[EUR][1000 genomes]
rs11160375	0.96[EUR][1000 genomes]
rs12587324	0.91[EUR][1000 genomes]
rs1280080	0.84[ASN][1000 genomes]
rs1385551	0.82[AFR][1000 genomes]
rs2145642	0.91[EUR][1000 genomes]
rs34459530	0.91[EUR][1000 genomes]
rs61981034	0.91[EUR][1000 genomes]
rs61981037	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv948620	chr14:97334444-98133191	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10873477	VRK1	cis	cerebellum	SCAN
rs10873477	VRK1	cis	parietal	SCAN
rs10873477	RIN3	cis	parietal	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97303400-97371600	Weak transcription	Ovary	ovary
2	chr14:97331000-97378400	Weak transcription	A549	lung
3	chr14:97342800-97367000	Weak transcription	NHEK	skin
4	chr14:97347000-97368200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr14:97349200-97367200	Weak transcription	Primary B cells from cord blood	blood
6	chr14:97349200-97367600	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr14:97349200-97377400	Weak transcription	Primary T cells from cord blood	blood
8	chr14:97349400-97369200	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr14:97355200-97363200	Weak transcription	K562	blood
10	chr14:97356000-97376600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr14:97360400-97363000	Enhancers	GM12878-XiMat	blood
12	chr14:97361400-97363000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr14:97361400-97374000	Weak transcription	Pancreas	Pancrea
14	chr14:97361600-97370400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr14:97361800-97367800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr14:97362000-97362800	Strong transcription	Thymus	Thymus
17	chr14:97362200-97363600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr14:97362200-97367800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr14:97362600-97362800	Enhancers	Spleen	Spleen
20	chr14:97362600-97363000	Strong transcription	Dnd41	blood
21	chr14:97362600-97374800	Weak transcription	Primary B cells from peripheral blood	blood

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