Variant report

Variant	rs2145642
Chromosome Location	chr14:97368154-97368155
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10873476	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10873477	0.91[EUR][1000 genomes]
rs11160375	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12587324	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12880379	0.82[ASN][1000 genomes]
rs1385551	0.80[EUR][1000 genomes]
rs1885162	0.83[ASN][1000 genomes]
rs34459530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61981034	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61981037	0.87[EUR][1000 genomes]
rs749280	0.82[ASN][1000 genomes]
rs8019314	0.84[ASN][1000 genomes]
rs8019561	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv948620	chr14:97334444-98133191	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv832867	chr14:97365919-97541763	Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97303400-97371600	Weak transcription	Ovary	ovary
2	chr14:97331000-97378400	Weak transcription	A549	lung
3	chr14:97347000-97368200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr14:97349200-97377400	Weak transcription	Primary T cells from cord blood	blood
5	chr14:97349400-97369200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr14:97356000-97376600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr14:97361400-97374000	Weak transcription	Pancreas	Pancrea
8	chr14:97361600-97370400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr14:97362600-97374800	Weak transcription	Primary B cells from peripheral blood	blood
10	chr14:97364000-97373000	Weak transcription	K562	blood
11	chr14:97366600-97370000	Weak transcription	Dnd41	blood
12	chr14:97366800-97372600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr14:97367600-97368800	Enhancers	H1 Cell Line	embryonic stem cell
14	chr14:97367600-97371800	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr14:97367600-97372800	Weak transcription	Primary B cells from cord blood	blood
16	chr14:97368000-97368200	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr14:97368000-97368400	Enhancers	GM12878-XiMat	blood
18	chr14:97368000-97370400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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