Variant report

Variant	rs10873782
Chromosome Location	chr1:86895595-86895596
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:86891052..86893486-chr1:86893692..86895662,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10493789	0.91[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10747328	0.91[CEU][hapmap]
rs10873777	0.86[CEU][hapmap]
rs10873780	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11161818	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11161819	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1158505	0.91[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs1158506	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1182102	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs1334143	0.91[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs1334144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1334145	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1334147	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1334148	0.96[CEU][hapmap]
rs175363	0.86[CEU][hapmap]
rs185655	0.87[YRI][hapmap]
rs1931363	0.95[CEU][hapmap]
rs2104962	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2151709	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2390055	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2390056	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs272491	0.90[YRI][hapmap]
rs272492	0.87[CEU][hapmap]
rs272498	0.90[CEU][hapmap];0.87[YRI][hapmap]
rs272504	0.86[CEU][hapmap]
rs272507	0.86[CEU][hapmap]
rs272516	0.86[CEU][hapmap];0.86[YRI][hapmap]
rs3765975	0.91[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs4288573	0.85[AFR][1000 genomes]
rs6695671	0.84[CEU][hapmap]
rs883200	0.98[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003838	chr1:86591841-87212231	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1002541	chr1:86689088-86905902	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:86890600-86903000	Weak transcription	Esophagus	oesophagus
2	chr1:86894200-86897400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr1:86894400-86895800	Enhancers	Hela-S3	cervix
4	chr1:86894400-86895800	Genic enhancers	HMEC	breast
5	chr1:86894400-86896200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr1:86894400-86896400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:86894400-86896600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr1:86894400-86896600	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr1:86894400-86896600	Enhancers	Dnd41	blood
10	chr1:86894400-86897000	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr1:86894400-86900200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:86894600-86896600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr1:86894600-86896600	Enhancers	Osteobl	bone
14	chr1:86894800-86895600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr1:86894800-86895800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr1:86894800-86895800	Enhancers	Rectal Mucosa Donor 29	rectum
17	chr1:86894800-86896000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr1:86894800-86896000	Enhancers	Fetal Thymus	thymus
19	chr1:86894800-86896200	Enhancers	Primary T cells from cord blood	blood
20	chr1:86894800-86896200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr1:86894800-86896200	Enhancers	Adipose Nuclei	Adipose
22	chr1:86894800-86896400	Enhancers	Primary hematopoietic stem cells	blood
23	chr1:86894800-86896400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
24	chr1:86894800-86896400	Enhancers	NHLF	lung
25	chr1:86894800-86896600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr1:86894800-86897200	Enhancers	NHDF-Ad	bronchial
27	chr1:86895000-86895800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr1:86895000-86895800	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr1:86895000-86895800	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr1:86895000-86895800	Enhancers	Thymus	Thymus
31	chr1:86895000-86896000	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr1:86895000-86896000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr1:86895000-86896000	Enhancers	Fetal Lung	lung
34	chr1:86895000-86896000	Weak transcription	Placenta	Placenta
35	chr1:86895000-86896000	Weak transcription	Small Intestine	intestine
36	chr1:86895000-86896200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr1:86895000-86896200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
38	chr1:86895000-86896200	Enhancers	HSMM	muscle
39	chr1:86895000-86896400	Enhancers	Muscle Satellite Cultured Cells	--
40	chr1:86895000-86896400	Enhancers	Placenta Amnion	Placenta Amnion
41	chr1:86895000-86896600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr1:86895000-86896600	Enhancers	HUVEC	blood vessel
43	chr1:86895000-86898800	Weak transcription	Spleen	Spleen
44	chr1:86895200-86896200	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr1:86895200-86896400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr1:86895200-86896600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr1:86895200-86896600	Enhancers	NH-A	brain
48	chr1:86895400-86895600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr1:86895400-86895800	Enhancers	NHEK	skin
50	chr1:86895400-86896000	Enhancers	Primary neutrophils fromperipheralblood	blood

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