Variant report

Variant	rs2104962
Chromosome Location	chr1:86876467-86876468
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:86874407..86876870-chr1:86880022..86881970,2	K562	blood:
2	chr1:86875370..86876946-chr1:86879084..86881970,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10493789	0.95[CEU][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes]
rs10747328	0.95[CEU][hapmap]
rs10873777	0.91[CEU][hapmap]
rs10873780	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10873782	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11161818	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11161819	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1158505	0.95[CEU][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1158506	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1182102	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs1334143	0.95[CEU][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1334144	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1334145	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap]
rs1334147	0.95[AFR][1000 genomes]
rs1334148	0.91[CEU][hapmap]
rs175363	0.91[CEU][hapmap]
rs185655	0.93[YRI][hapmap]
rs1931363	0.91[CEU][hapmap]
rs2151709	0.95[AFR][1000 genomes]
rs272491	0.82[CEU][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes]
rs272492	0.91[CEU][hapmap]
rs272498	0.95[CEU][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs272504	0.91[CEU][hapmap]
rs272507	0.91[CEU][hapmap]
rs272516	0.91[CEU][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs3765975	0.94[ASW][hapmap];0.95[CEU][hapmap];0.98[LWK][hapmap];0.84[MKK][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs405424	0.83[AFR][1000 genomes]
rs4288573	0.88[AFR][1000 genomes]
rs6695671	0.87[CEU][hapmap]
rs883200	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv546722	chr1:86278315-86891073	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1003838	chr1:86591841-87212231	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1002541	chr1:86689088-86905902	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv871081	chr1:86806372-86892819	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:86873400-86876600	Weak transcription	Right Atrium	heart
2	chr1:86876400-86876600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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