Variant report

Variant	rs10874305
Chromosome Location	chr1:75937429-75937430
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1036950	0.88[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10747387	0.88[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap]
rs10874264	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1107148	0.87[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1116878	0.87[CHB][hapmap];0.89[JPT][hapmap]
rs1249784	0.88[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1249786	0.88[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1858627	0.88[CHB][hapmap];0.94[JPT][hapmap];0.87[YRI][hapmap]
rs1858628	0.88[CHB][hapmap];0.94[JPT][hapmap]
rs1889036	0.81[CEU][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs1936358	0.88[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2347214	0.87[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes]
rs2587042	0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6593575	1.00[JPT][hapmap];0.89[AMR][1000 genomes]
rs6675276	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519329	chr1:75830438-76358591	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv546581	chr1:75897055-75937429	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3359779	chr1:75914980-75939472	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3445096	chr1:75933216-76126980	Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:75936800-75937800	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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