Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1036950	0.83[JPT][hapmap]
rs10747387	0.83[JPT][hapmap]
rs10874305	0.81[CEU][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs10874311	0.94[CHB][hapmap];0.89[JPT][hapmap]
rs1107148	0.83[JPT][hapmap]
rs12022154	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs12048595	0.83[JPT][hapmap]
rs1249786	0.83[JPT][hapmap]
rs12738260	1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[GIH][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs1858627	0.83[JPT][hapmap]
rs1858628	0.83[JPT][hapmap]
rs1936358	0.83[JPT][hapmap]
rs211699	0.83[JPT][hapmap]
rs211700	0.83[JPT][hapmap]
rs211757	0.82[JPT][hapmap]
rs211764	0.83[JPT][hapmap]
rs2347214	0.83[JPT][hapmap]
rs2587042	0.88[JPT][hapmap]
rs6593575	0.89[JPT][hapmap]
rs6675276	0.89[JPT][hapmap]
rs7542976	0.87[ASN][1000 genomes]
rs910567	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519329	chr1:75830438-76358591	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv3359779	chr1:75914980-75939472	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3445096	chr1:75933216-76126980	Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1889036	IFI44	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:75938000-75941000	Enhancers	HUVEC	blood vessel
2	chr1:75938200-75939000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:75938400-75939200	Flanking Active TSS	K562	blood

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