Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:75959031..75961089-chr1:75965586..75967160,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1036950	0.82[JPT][hapmap]
rs10489587	0.84[GIH][hapmap];0.88[JPT][hapmap]
rs10747387	0.82[JPT][hapmap]
rs10874311	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1107148	0.82[JPT][hapmap]
rs11163762	0.82[JPT][hapmap]
rs12022154	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12048595	0.84[GIH][hapmap];0.94[JPT][hapmap]
rs1249784	0.88[JPT][hapmap]
rs1249786	0.82[JPT][hapmap]
rs12752305	0.94[CEU][hapmap]
rs1576920	0.84[EUR][1000 genomes]
rs1858627	0.82[JPT][hapmap]
rs1858628	0.82[JPT][hapmap]
rs1889036	1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[GIH][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs1936358	0.82[JPT][hapmap]
rs211699	0.84[GIH][hapmap];0.94[JPT][hapmap]
rs211700	0.94[JPT][hapmap]
rs211757	0.93[JPT][hapmap]
rs211764	0.84[GIH][hapmap];0.94[JPT][hapmap]
rs2347214	0.82[JPT][hapmap]
rs2587042	0.81[JPT][hapmap]
rs4949865	0.84[GIH][hapmap];0.88[JPT][hapmap]
rs6593577	0.82[JPT][hapmap]
rs7542976	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs910567	0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519329	chr1:75830438-76358591	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv3445096	chr1:75933216-76126980	Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12738260	SNORD45C	cis	lymphoblastoid	seeQTL
rs12738260	FAM108C1	trans	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:75965600-75966800	Weak transcription	Fetal Brain Female	brain

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