Variant report

Variant	rs211757
Chromosome Location	chr1:76037238-76037239
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:76032378..76034524-chr1:76036114..76037930,2	K562	blood:
2	chr1:76027597..76030890-chr1:76036483..76038711,3	K562	blood:
3	chr1:76031520..76033878-chr1:76036430..76038361,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10453873	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10489587	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs10874311	0.94[JPT][hapmap]
rs10874366	1.00[CEU][hapmap]
rs10874383	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10874394	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11163751	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11163762	0.90[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs12022154	0.94[JPT][hapmap]
rs12048595	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1249784	0.81[JPT][hapmap]
rs12738260	0.93[JPT][hapmap]
rs12746880	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1591121	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1889036	0.82[JPT][hapmap]
rs1953077	0.92[CHB][hapmap];0.80[JPT][hapmap]
rs2026445	0.92[CHB][hapmap];0.82[JPT][hapmap]
rs2065481	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs211699	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs211700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs211745	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs211764	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4141466	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4625236	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4949865	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4949866	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6593577	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs6670304	0.92[CHB][hapmap];0.80[JPT][hapmap]
rs910567	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519329	chr1:75830438-76358591	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv3445096	chr1:75933216-76126980	Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2757737	chr1:75986904-76187748	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv2758943	chr1:75986904-76187748	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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