Variant report
Variant | rs6670304 |
---|---|
Chromosome Location | chr1:76023350-76023351 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr1:76020704..76023494-chr1:76034910..76036939,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10157374 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs10489587 | 0.86[CHD][hapmap] |
rs11163638 | 0.82[AMR][1000 genomes] |
rs12048595 | 0.82[CHB][hapmap];0.86[CHD][hapmap] |
rs12128379 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs12137501 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs12139331 | 0.85[CEU][hapmap];0.80[AMR][1000 genomes] |
rs1953077 | 1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs2026445 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs211699 | 0.82[CHB][hapmap];0.85[CHD][hapmap] |
rs211700 | 0.88[CHB][hapmap] |
rs211757 | 0.92[CHB][hapmap];0.80[JPT][hapmap] |
rs211764 | 0.82[CHB][hapmap];0.86[CHD][hapmap];0.80[ASN][1000 genomes] |
rs2224101 | 0.82[CEU][hapmap] |
rs4949673 | 0.81[CEU][hapmap] |
rs61797265 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6593577 | 0.93[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap] |
rs6695604 | 1.00[CEU][hapmap] |
rs7518629 | 0.93[ASW][hapmap];0.81[CEU][hapmap] |
rs910567 | 0.82[CHB][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv519329 | chr1:75830438-76358591 | Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
2 | esv3445096 | chr1:75933216-76126980 | Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
3 | esv2757737 | chr1:75986904-76187748 | Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
4 | esv2758943 | chr1:75986904-76187748 | Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
5 | nsv830270 | chr1:76002220-76033156 | Weak transcription Enhancers Active TSS | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
No data |