Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10158990	0.81[CEU][hapmap]
rs11163638	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12128379	0.82[AMR][1000 genomes]
rs12139331	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1332788	0.82[ASN][1000 genomes]
rs1739902	0.81[CEU][hapmap];0.81[GIH][hapmap]
rs1953077	0.81[CEU][hapmap]
rs211695	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2224101	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs379463	0.82[ASN][1000 genomes]
rs388270	0.82[ASN][1000 genomes]
rs390796	0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs398450	0.82[ASN][1000 genomes]
rs425777	0.82[ASN][1000 genomes]
rs425994	0.82[ASN][1000 genomes]
rs4949673	0.92[CEU][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs61797265	0.82[AMR][1000 genomes]
rs6593584	0.87[CHD][hapmap];0.85[JPT][hapmap]
rs6658825	0.81[CEU][hapmap]
rs6670304	0.93[ASW][hapmap];0.81[CEU][hapmap]
rs6695604	0.81[CEU][hapmap]
rs718883	0.82[CHB][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap]
rs920813	0.81[CEU][hapmap];0.81[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519329	chr1:75830438-76358591	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv3445096	chr1:75933216-76126980	Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2757737	chr1:75986904-76187748	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv2758943	chr1:75986904-76187748	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv830270	chr1:76002220-76033156	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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