Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10489587	0.86[JPT][hapmap]
rs10747387	0.81[JPT][hapmap]
rs10874311	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1107148	0.82[JPT][hapmap]
rs1116878	0.82[JPT][hapmap]
rs12048595	0.93[JPT][hapmap]
rs1249784	0.88[JPT][hapmap]
rs12738260	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12752305	0.93[CEU][hapmap];1.00[YRI][hapmap]
rs1576920	0.81[EUR][1000 genomes]
rs1858628	0.81[JPT][hapmap]
rs1889036	1.00[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs211699	0.93[JPT][hapmap]
rs211700	0.88[JPT][hapmap]
rs211757	0.94[JPT][hapmap]
rs211764	0.93[JPT][hapmap]
rs4949865	0.86[JPT][hapmap]
rs6593577	0.82[JPT][hapmap]
rs7542976	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs910567	0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519329	chr1:75830438-76358591	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv3445096	chr1:75933216-76126980	Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

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