Variant report

Variant	rs10874831
Chromosome Location	chr1:94555166-94555167
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2275035	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4847196	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5776202	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871057	chr1:94513142-94577286	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv871558	chr1:94544276-94576968	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv870555	chr1:94545160-94577744	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
4	esv1807674	chr1:94549175-94588191	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94536400-94556400	Weak transcription	Right Atrium	heart
2	chr1:94545800-94557600	Weak transcription	Brain Angular Gyrus	brain
3	chr1:94550400-94555400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr1:94550400-94557200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:94550400-94559000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:94550600-94555400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr1:94550600-94555400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr1:94550600-94555600	Weak transcription	Fetal Kidney	kidney
9	chr1:94551400-94557800	Weak transcription	Spleen	Spleen
10	chr1:94552800-94556000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr1:94553200-94555400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr1:94553200-94556000	Weak transcription	Dnd41	blood
13	chr1:94553400-94556000	Weak transcription	Thymus	Thymus
14	chr1:94554200-94555600	Weak transcription	Fetal Thymus	thymus
15	chr1:94554800-94555400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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