Variant report

Variant	rs5776202
Chromosome Location	chr1:94550715-94550716
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10874831	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2275035	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4847196	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871057	chr1:94513142-94577286	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv871558	chr1:94544276-94576968	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv870555	chr1:94545160-94577744	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
4	esv1807674	chr1:94549175-94588191	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94536400-94556400	Weak transcription	Right Atrium	heart
2	chr1:94545800-94554000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:94545800-94557600	Weak transcription	Brain Angular Gyrus	brain
4	chr1:94548600-94550800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr1:94549800-94551200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:94549800-94552200	Weak transcription	Dnd41	blood
7	chr1:94550400-94551200	Enhancers	NHEK	skin
8	chr1:94550400-94555400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr1:94550400-94557200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr1:94550400-94559000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:94550600-94551200	Weak transcription	Spleen	Spleen
12	chr1:94550600-94552200	Weak transcription	Fetal Thymus	thymus
13	chr1:94550600-94553000	Weak transcription	Thymus	Thymus
14	chr1:94550600-94555400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr1:94550600-94555400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr1:94550600-94555600	Weak transcription	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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