Variant report

Variant	rs10875884
Chromosome Location	chr12:49285436-49285437
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000172602	Chromatin interaction
ENSG00000212195	Chromatin interaction
ENSG00000167535	Chromatin interaction
ENSG00000174243	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10783288	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17175174	1.00[JPT][hapmap]
rs2228417	1.00[JPT][hapmap]
rs2453477	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs58829932	1.00[ASN][1000 genomes]
rs7954041	1.00[ASN][1000 genomes]
rs833475	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs833477	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs833480	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs833482	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832404	chr12:49258560-49458555	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:49284200-49285600	Active TSS	iPS-20b Cell Line	embryonic stem cell
2	chr12:49284400-49285600	Active TSS	Fetal Brain Female	brain
3	chr12:49284600-49285600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
4	chr12:49285200-49285600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr12:49285200-49285600	Enhancers	Brain Angular Gyrus	brain
6	chr12:49285200-49285600	Bivalent Enhancer	A549	lung
7	chr12:49285400-49285600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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